View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_55 (Length: 308)
Name: NF17260_low_55
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 785402 - 785124
Alignment:
| Q |
13 |
atactctccatttatatcgacattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacac |
112 |
Q |
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| T |
785402 |
atactctccatttatatcgacattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacac |
785303 |
T |
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| Q |
113 |
atactatctggaaccttctaattttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactg |
212 |
Q |
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| T |
785302 |
atactatctggaaccttctaattttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactg |
785203 |
T |
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| Q |
213 |
attcctttataattagtatgcataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaatt |
291 |
Q |
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| T |
785202 |
attcctttataattagtatgcataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaatt |
785124 |
T |
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