View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_64 (Length: 277)

Name: NF17260_low_64
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_64
NF17260_low_64
[»] chr1 (3 HSPs)
chr1 (18-255)||(34025981-34026217)
chr1 (40-254)||(35015470-35015674)
chr1 (110-254)||(35014930-35015073)
[»] scaffold0340 (2 HSPs)
scaffold0340 (40-254)||(9889-10093)
scaffold0340 (110-254)||(9349-9492)
[»] chr8 (5 HSPs)
chr8 (40-255)||(26811477-26811682)
chr8 (110-254)||(26812079-26812222)
chr8 (215-256)||(202575-202616)
chr8 (215-256)||(317412-317453)
chr8 (215-255)||(26847096-26847136)
[»] chr5 (2 HSPs)
chr5 (215-255)||(39466884-39466924)
chr5 (215-254)||(33087475-33087514)
[»] chr3 (4 HSPs)
chr3 (215-254)||(55336-55375)
chr3 (215-254)||(18745379-18745418)
chr3 (215-252)||(18744622-18744659)
chr3 (215-255)||(53344016-53344056)
[»] chr7 (2 HSPs)
chr7 (217-254)||(33261424-33261461)
chr7 (215-255)||(2403450-2403490)
[»] chr6 (1 HSPs)
chr6 (215-256)||(2138475-2138516)
[»] chr2 (2 HSPs)
chr2 (217-254)||(44296860-44296897)
chr2 (215-255)||(20606930-20606970)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 34026217 - 34025981
Alignment:
Q  18 acttgattagaattaaaaatttatttggaagttgacatggttgggtggttgatagttgttgctattgggagtttgacagcagttgccattgcgtgagagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026217 acttgattagaattaaaaatttatttggaagttgacatggttgggtggttgatagttgttgctattgggagtttgacagcagttgccattgcgtgagagg 34026118  T
Q  118 aagagagaagaaagaaggaaacaattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatggttcacgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  34026117 aagagagaagaaagaaggaaacaattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatg-gctttttttcatggttcacgg 34026019  T
Q  218 tgagggacttgattggaccctcatcctagaattcacct 255  Q
    |||||||||||||||||||||||  ||| |||||||||    
T  34026018 tgagggacttgattggaccctcactctaaaattcacct 34025981  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 35015470 - 35015674
Alignment:
Q  40 atttggaagttgacatggttgggtggttgatagttgttgctattgggagtttgacagcagttgccattgcgtgagaggaagagagaagaaagaaggaaac 139  Q
    ||||||||||||||||||||||| |||||| ||        |||| |||||||||||  |||||||| | ||||||||||||| |||||||||| |||||    
T  35015470 atttggaagttgacatggttgggaggttgacag--------attgagagtttgacagtggttgccatag-gtgagaggaagagggaagaaagaaagaaac 35015560  T
Q  140 aattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatggttcacggtgagggacttgattggaccctc 239  Q
    |||||| ||||||||| |||| || |||||||  |||| |||||||||||| ||||          ||||||||||||||||||||||| ||||||||||    
T  35015561 aattataatgtatgagggatgtatcgtaagatctggtatgacaacataatcgaatg-gttttctttcatggttcacggtgagggacttggttggaccctc 35015659  T
Q  240 atcctagaattcacc 254  Q
    | |||||||| ||||    
T  35015660 accctagaatccacc 35015674  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 35015073 - 35014930
Alignment:
Q  110 gtgagaggaagagagaagaaagaaggaaacaattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatg 209  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||| | |||||||||||||  ||||||||||||||||||||||          ||||    
T  35015073 gtgaaaggaagagagaagaaagaaagaaataattatcatgtatgaggggtgcattgtaagatctggtaggacaacataatctaatg-gtttttgttcatg 35014975  T
Q  210 gttcacggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||||||| ||| |||||||||||  ||||||| ||||    
T  35014974 gttcacggtgagggatttggttggaccctcactctagaatccacc 35014930  T

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Target: scaffold0340 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 9889 - 10093
Alignment:
Q  40 atttggaagttgacatggttgggtggttgatagttgttgctattgggagtttgacagcagttgccattgcgtgagaggaagagagaagaaagaaggaaac 139  Q
    ||||||||||||||||||||||| |||||| ||        |||| |||||||||||  |||||||| | ||||||||||||| |||||||||| |||||    
T  9889 atttggaagttgacatggttgggaggttgacag--------attgagagtttgacagtggttgccatag-gtgagaggaagagggaagaaagaaagaaac 9979  T
Q  140 aattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatggttcacggtgagggacttgattggaccctc 239  Q
    |||||||||||||||| |||| ||  ||||||  |||| |||||||||||| ||||          ||||||||||||||||||||||| ||||||||||    
T  9980 aattattatgtatgagggatgtatcataagatctggtatgacaacataatcgaatg-gttttctttcatggttcacggtgagggacttggttggaccctc 10078  T
Q  240 atcctagaattcacc 254  Q
    | |||||||| ||||    
T  10079 accctagaatccacc 10093  T

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Target: scaffold0340; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 9492 - 9349
Alignment:
Q  110 gtgagaggaagagagaagaaagaaggaaacaattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatg 209  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||  ||||||||||||||||||||| |         ||||    
T  9492 gtgaaaggaagagagaagaaagaaagaaataattattatgtatgaggggtgcattgtaagatctggtaggacaacataatctaat-agtttttgttcatg 9394  T
Q  210 gttcacggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||||||||||| ||||||| |||  ||||||| ||||    
T  9393 gttcacggtgagggacttggttggaccttcactctagaatccacc 9349  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 26811682 - 26811477
Alignment:
Q  40 atttggaagttgacatggttgggtggttgatagttgttgctattgggagtttgacagcagttgccattgcgtgagaggaagagagaagaaagaaggaaac 139  Q
    ||||||||||||||||||||||| |||||| ||        |||| |||||||||||  |||||||| | ||||||||||||| ||||||||||  ||||    
T  26811682 atttggaagttgacatggttgggaggttgacag--------attgagagtttgacagtggttgccatag-gtgagaggaagagggaagaaagaaataaac 26811592  T
Q  140 aattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatggttcacggtgagggacttgattggaccctc 239  Q
    |||||||||||||||| |||| || |||||||  |||| |||||||||||| ||||          ||||||||||||||||||||||| ||||| ||||    
T  26811591 aattattatgtatgagggatgtatcgtaagatctggtatgacaacataatcgaatg-gttttctttcatggttcacggtgagggacttggttggatcctc 26811493  T
Q  240 atcctagaattcacct 255  Q
    | |||||||| |||||    
T  26811492 accctagaatccacct 26811477  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 26812079 - 26812222
Alignment:
Q  110 gtgagaggaagagagaagaaagaaggaaacaattattatgtatgagagatgcattgtaagataaggtaggacaacataatctaatgaannnnnnnncatg 209  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||| | | |||||||||||  ||||||||||||||||||||||          ||||    
T  26812079 gtgaaaggaagagagaagaaagaaagaaataattattatgtatgaggggtccattgtaagatctggtaggacaacataatctaatg-gtttttgttcatg 26812177  T
Q  210 gttcacggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||||||||||| |||||||||||  ||||||| ||||    
T  26812178 gttcacggtgagggacttggttggaccctcactctagaatccacc 26812222  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 202616 - 202575
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacctt 256  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  202616 cggtgagggacttaattgaaccctcatcctagaattcacctt 202575  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 317453 - 317412
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacctt 256  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  317453 cggtgagggacttaattgaaccctcatcctagaattcacctt 317412  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 26847136 - 26847096
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacct 255  Q
    ||||||||||||| |||||||||||| |||||||| |||||    
T  26847136 cggtgagggacttaattggaccctcaccctagaatccacct 26847096  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 39466924 - 39466884
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacct 255  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  39466924 cggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 33087475 - 33087514
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  33087475 cggtgagggacttgattgatccctcatcctagaattcacc 33087514  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 55336 - 55375
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  55336 cggtgagggacttaattgaaccctcatcctagaattcacc 55375  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 18745379 - 18745418
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacc 254  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  18745379 cggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 18744659 - 18744622
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattca 252  Q
    |||||||||||||||||  |||||||||||||||||||    
T  18744659 cggtgagggacttgattaaaccctcatcctagaattca 18744622  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 53344056 - 53344016
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacct 255  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  53344056 cggtgagggacttgattgatccctcatcctagaatccacct 53344016  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 33261424 - 33261461
Alignment:
Q  217 gtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  33261424 gtgagggacttaattggaccctcatcctagaatccacc 33261461  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 2403450 - 2403490
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacct 255  Q
    |||||||||||||  ||| ||||||||||||||||||||||    
T  2403450 cggtgagggacttagttgaaccctcatcctagaattcacct 2403490  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 2138516 - 2138475
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacctt 256  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  2138516 cggtgagggacctaattggaccctcaccctagaattcacctt 2138475  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 44296897 - 44296860
Alignment:
Q  217 gtgagggacttgattggaccctcatcctagaattcacc 254  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  44296897 gtgagggacttaattggaccctcaccctagaattcacc 44296860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 20606930 - 20606970
Alignment:
Q  215 cggtgagggacttgattggaccctcatcctagaattcacct 255  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  20606930 cggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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