View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_7 (Length: 639)
Name: NF17260_low_7
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 9 - 622
Target Start/End: Complemental strand, 43948229 - 43947618
Alignment:
| Q |
9 |
gagatgaaattaagaaaatatgccaagagaacacggttcataaggagcaattgaaacataaagatgcagtttgtgatgaagtaatgaagttgagggaaga |
108 |
Q |
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| T |
43948229 |
gagatgaaattaagaaaatatgccaagagaacacggttcataaggagcaattgaaacagaaagatgcagtttgtgatgaagtaatgaagttgagggaaga |
43948130 |
T |
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| Q |
109 |
aatagaaaaactaaagggagagaaagtggcacaaaaggaagaactcaagcaaaaggatgaagagaaaatagaggtgattaagcaactcagcttagcaata |
208 |
Q |
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| T |
43948129 |
aatagaaaaactaaagggagagaaagtggcacaaaaggaagaactcaagcaaaaggatgaagagaaaatagaggtgattaagcaactcagcttagcaata |
43948030 |
T |
|
| Q |
209 |
gatatgttgaaacaagataatatgaatatgagaagcttgatcactaaagagtccgctaagaaatggaagtttccatttgaattcaacaaatttggaggag |
308 |
Q |
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| T |
43948029 |
gatatgttgaaacaagataatatgaatatgagaagcttcatcactaaagagtccgctaagaaatggaagtttccatttgaattcaacaaatttggaggag |
43947930 |
T |
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| Q |
309 |
cattttctatgaaattattcaatggaaatccaagaaatcagcccagtcttgaactctctagatgtggtttacagactcaccaagtagcatagttatgtat |
408 |
Q |
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| T |
43947929 |
cattttctatgaaattattcaatggaaatccaagaaatcagcccagtcttgaactctctagatgtggtttacagattcaccaagtagcatagttatgtat |
43947830 |
T |
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| Q |
409 |
aacattcttattcttataaatatttatacaataagttcctagtcttagattagtagtttgcgtgcttataatggtaattgtattttttatgtgcccttca |
508 |
Q |
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| T |
43947829 |
aacattcttattcttataaatatttatacaataagttcctagtcttagattcgtagtttgcgtgcttataatggtaattgtattttttatgtgcccttca |
43947730 |
T |
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| Q |
509 |
cttggctagttatatgtattccgaatgttacaannnnnnnaattctttatgcatgtggtgattgtgttttagaccaccttaaaccttgtttatgtatgtt |
608 |
Q |
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| T |
43947729 |
cttggctagttatatgtattccgaatgttacaatttttttaattctttatgcatgtggtgattgtgttttagaccaccttaaaccttgtttatgtatgt- |
43947631 |
T |
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| Q |
609 |
atacatgctatatt |
622 |
Q |
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| T |
43947630 |
-tacatgctatatt |
43947618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 28255718 - 28255766
Alignment:
| Q |
401 |
ttatgtataacattcttattcttataaatatttatacaataagttccta |
449 |
Q |
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| T |
28255718 |
ttatgtataacattcttattcatataaatatttagacaataagttccta |
28255766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 39955082 - 39955114
Alignment:
| Q |
84 |
atgaagtaatgaagttgagggaagaaatagaaa |
116 |
Q |
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| T |
39955082 |
atgaagtaatgaagttgagggaagaattagaaa |
39955114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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