View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_71 (Length: 265)
Name: NF17260_low_71
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 12197309 - 12197547
Alignment:
| Q |
19 |
agttgtcacttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcaccacctccatctattctgagaatattcaccacc |
118 |
Q |
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| T |
12197309 |
agttgtcacttcatgaactataccctgacttgtgcagtaagattcaaaatatctagaagtatattcaccacctccatctgttctgagaatattcaccacc |
12197408 |
T |
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| Q |
119 |
ttcaaatcttacaaatact--gagatggtagaattatgagaattttctccatgattgctttatcagaaagagtctcaccacatagcttcatctgatttgt |
216 |
Q |
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||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12197409 |
ttcaaatcttacaaagaatatgagatggtagaattatgagaattttctccatgattgctttatcagaaagagtctcacaacatagcttcatctgatttgt |
12197508 |
T |
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| Q |
217 |
gattgttttaattgattagaaatattcctctatcttctt |
255 |
Q |
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| T |
12197509 |
gattgtttgaattgattagaaatattcctctatgttctt |
12197547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 6373196 - 6373285
Alignment:
| Q |
19 |
agttgtcacttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcaccacctccatctattctgagaat |
108 |
Q |
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| T |
6373196 |
agttgtcacttcatgaattatactctaacttgtgcaataagattaaaaatctctagaagtatattcaccacctccatctgttttgagaat |
6373285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 14639004 - 14638928
Alignment:
| Q |
19 |
agttgtcacttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcaccacctccat |
95 |
Q |
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| T |
14639004 |
agttgtaacttcatggattataccctgatttgtgcagtaagattcaaaatctttagaagtatattcaccccctccat |
14638928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 14637684 - 14637619
Alignment:
| Q |
158 |
attttctccatgattgctttatcagaaagagtctcaccacatagcttcatctgatttgtgattgtt |
223 |
Q |
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| T |
14637684 |
attttttccataactgatttatcaaaaagagtctcaccacaaatcttcatctgctttgtgattgtt |
14637619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 33683956 - 33683906
Alignment:
| Q |
58 |
agattcaaaatatctagaagtatattcaccacctccatctattctgagaat |
108 |
Q |
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| T |
33683956 |
agattcaaaatctctagaggtatattcaccacctccatctgttctaagaat |
33683906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 33701010 - 33700960
Alignment:
| Q |
58 |
agattcaaaatatctagaagtatattcaccacctccatctattctgagaat |
108 |
Q |
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| T |
33701010 |
agattcaaaatctctagaggtatattcaccacctccatctgttctaagaat |
33700960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33682636 - 33682574
Alignment:
| Q |
158 |
attttctccatgattgctttatcagaaagagtctcaccacatagcttcatctgatttgtgattg |
221 |
Q |
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| T |
33682636 |
attttctccacaactgatttatcagaaagtgtctcaccacatag-tttatctgatttgtgattg |
33682574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33699690 - 33699628
Alignment:
| Q |
158 |
attttctccatgattgctttatcagaaagagtctcaccacatagcttcatctgatttgtgattg |
221 |
Q |
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| T |
33699690 |
attttctccacaactgatttatcagaaagtgtctcaccacatag-tttatctgatttgtgattg |
33699628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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