View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_74 (Length: 256)
Name: NF17260_low_74
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 44859809 - 44860035
Alignment:
| Q |
18 |
agaatgctatataaaatttggagttttgtaattgttgatgattgaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcg |
117 |
Q |
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| T |
44859809 |
agaatgctatataaaatttggagttttgtaattgttgatgattgaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcg |
44859908 |
T |
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| Q |
118 |
aaacagttcttctgatatcaacaatgagttatataaaggacagaccaatgagatcgcttcaggtacttttatcattatgtttcaataggcataatgcgtg |
217 |
Q |
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| T |
44859909 |
taacagttcttctgatatcaacaatgagttatataaaggacagaccaatgagatcgcttcaggtacttttatcattatgtttcaataggcataatgcgtg |
44860008 |
T |
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| Q |
218 |
gaaggtaatactcagtttttatatatt |
244 |
Q |
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| T |
44860009 |
gaaggtaatactcagtttttatatatt |
44860035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 44870519 - 44870703
Alignment:
| Q |
20 |
aatgctatataaaatttggagttttgtaattgttgatgatt--gaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcg |
117 |
Q |
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| T |
44870519 |
aatgctatataaaatttggagttttgtaatcgttaatgattttgaatttatttccatttgatataggaatcagttgtggtcaggttattaatctttggcg |
44870618 |
T |
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| Q |
118 |
aaacagttcttctgatatcaacaatgagttatataaaggacagaccaatgagatcgcttcaggtacttttatcattatgtttcaa |
202 |
Q |
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| T |
44870619 |
taacagttcttctgatatcaacaatgagttgtataaaaggcaggtcaatggggtggtttcaggtacttttatcattatgtttcaa |
44870703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 44846935 - 44847062
Alignment:
| Q |
28 |
ataaaatttggagttttgtaattgttgatgattgaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcgaaacagttct |
127 |
Q |
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|||||||||||||||| |||||||| ||| |||||||| ||||| | || |||||| ||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
44846935 |
ataaaatttggagtttc-taattgtttatggttgaatttgtttccactagaagtagaagtcagatgtggtcaagttataaatttttggcgtaacagttcc |
44847033 |
T |
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| Q |
128 |
tctgatatcaacaatgagttatataaagg |
156 |
Q |
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| T |
44847034 |
tctgatatcgacactgagttatataaagg |
44847062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 44895852 - 44895959
Alignment:
| Q |
49 |
ttgttgatgattgaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcgaaacagttcttctgatatcaacaatgagtta |
148 |
Q |
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||||| ||| |||||| || |||| ||||||||||||||||||||| | | ||||||||| | ||||| |||||||||||| ||||||||||||||| |
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| T |
44895852 |
ttgttaatggttgaatatatttccccttgatgtagaaatcagatgtgctgacggtataaatttgtggcgtgacagttcttctgtgatcaacaatgagtta |
44895951 |
T |
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| Q |
149 |
tataaagg |
156 |
Q |
| |
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||| |||| |
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| T |
44895952 |
tatgaagg |
44895959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 44835475 - 44835551
Alignment:
| Q |
75 |
ttgatgtagaaatcagatgtggtcaaggtataaatctttggcgaaacagttcttctgatatcaacaatgagttatat |
151 |
Q |
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||||||||||||||| ||||| || ||||||| || ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
44835475 |
ttgatgtagaaatcaaatgtgctcgaggtatatattcatggcgtaacagttcttctgatatcaacaaagagttatat |
44835551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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