View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_78 (Length: 249)
Name: NF17260_low_78
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_78 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 3968698 - 3968488
Alignment:
| Q |
37 |
tgaatataatttcatgtgattaaaggtgttggcgctaaacaacatacaaactcataattggcaagatttaaattttgggttgagttgtgctgttaatcct |
136 |
Q |
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| T |
3968698 |
tgaatataatttcatgtgattaaaggtgttggcgctaaacaacatacaaactcataattggtaagattcaaattttgggttgagctg--ctgctaatcct |
3968601 |
T |
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| Q |
137 |
ttatggatgacaaaatcaatcattttaattctaaaatcatagatctaggtgactcaacattgttatgtgtgatcctttgaactttttatagaaggtcaac |
236 |
Q |
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| T |
3968600 |
ttttgaatgacaaaatcaatccttttaattccaaaatcatagatctaggtgactcaacattgttatgcgtgatcctttgaactttttatagaaggttaac |
3968501 |
T |
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| Q |
237 |
aaactcagatact |
249 |
Q |
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| T |
3968500 |
aaactcagatact |
3968488 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 10950785 - 10950740
Alignment:
| Q |
193 |
acattgttatgtgtgatcctttgaactttttatagaaggtcaacaa |
238 |
Q |
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| T |
10950785 |
acattgttatatgtgaccctttgaactttatgtagaaggtcaacaa |
10950740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 10958790 - 10958745
Alignment:
| Q |
193 |
acattgttatgtgtgatcctttgaactttttatagaaggtcaacaa |
238 |
Q |
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| T |
10958790 |
acattgttatatgtgaccctttgaactttatgtagaaggtcaacaa |
10958745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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