View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_8 (Length: 611)
Name: NF17260_low_8
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_8 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 112 - 594
Target Start/End: Complemental strand, 82750 - 82262
Alignment:
| Q |
112 |
atgtggccgttgattcaggcaggtaacgtgggccttgtacaacaaactgttagaagaaacaactgtattcctaaagataaccatcacattttagtgacta |
211 |
Q |
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| T |
82750 |
atgtggccattgattcaggcaggtaacgtgggcatc--acaacaaactgttagaagaaacaactgtattcctaaacataaccatcacattttattgacta |
82653 |
T |
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| Q |
212 |
catgggtagatatcttacaaagagatgagaaaaagggttatgaagtatgtgtga----tgtaattctccttctatctcggtaattctctagtccctccct |
307 |
Q |
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| T |
82652 |
catgggtagatatcttacaaagagatgagaaaaatggttatgaagtatgcgtgagtgatgtaattctccttctatctcactaattctctagtccctccct |
82553 |
T |
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| Q |
308 |
tatattattagtctgattcttactgcatttcttttatt----acctattattctctagcaacaaagattctagttaccaagttgtagtaatgcttctttg |
403 |
Q |
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| T |
82552 |
tatattattagtctgattcttactgcatttcttttatttattacctattattctctagcaacaaagattctagttaccaagttgttgtaatgcttctttg |
82453 |
T |
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| Q |
404 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
503 |
Q |
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| T |
82452 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
82353 |
T |
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| Q |
504 |
ctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccatgcgtgaaacaaaccgacaatgt |
594 |
Q |
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| T |
82352 |
ctctctccatggtgcttgggactcaatgcaagaaactccaatacagtcatcgcacctcatttcttccatggctgaaacaaaccgacaatgt |
82262 |
T |
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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 573
Target Start/End: Original strand, 19152794 - 19152973
Alignment:
| Q |
390 |
gtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatca |
489 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||| | | ||||||||||||| || |||||||| || |||||| || |
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| T |
19152794 |
gtaatgcttctttgatagaatcaataaaatctcattagcatttccatttcaactta----gtagaatcattatactggtgttttcagtgacaccatggca |
19152889 |
T |
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| Q |
490 |
gccctgctagagagctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccatg |
573 |
Q |
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| T |
19152890 |
tccctacttgagagctcttcccatggtgcgagaaactcaataaaagaaactccactacagtcatcacgtctcatttcttccatg |
19152973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 445
Target Start/End: Original strand, 33117034 - 33117114
Alignment:
| Q |
362 |
caacaaagattctagttaccaagttgtagtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattga |
445 |
Q |
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| T |
33117034 |
caacaaagattgtaattaccaagttgta---atgcttatttgagtgaatgaatgaaatctcatttacatttccattccaattga |
33117114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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