View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_81 (Length: 247)
Name: NF17260_low_81
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44860036 - 44860274
Alignment:
| Q |
1 |
gttttgacagcttttgattttctaaattcaaatgaggatggattcgacattgttgtatggtacaagtcagtcttcagtcgtggcatacattctcctccaa |
100 |
Q |
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| T |
44860036 |
gttttgacagcttttgattttctaaattcaaatgaggatggattcgacattgttgtatggtacaagtcagtcttcagtcgtggcatacattctccttcaa |
44860135 |
T |
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| Q |
101 |
ctacattgttgcgaattcctcgttctgtaaatctggtatatatctaaaacctattttaattgttgcatattagggattaatgaggaaacagaaaactcat |
200 |
Q |
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| T |
44860136 |
ctacattgttgcggattcctcgttctgtaaatctggtatatatctaaaacctattttaattgttgcatattagggattaatgaggaaacagaaaactcat |
44860235 |
T |
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| Q |
201 |
cctcagcttnnnnnnncatgcaacttagtagtctgtgct |
239 |
Q |
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| T |
44860236 |
cctcagcttaaaaaaacatgcaacttagtagtctgtgct |
44860274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 44896059 - 44896224
Alignment:
| Q |
3 |
tttgacagcttttgattttctaaattcaaatgaggatggattcgacattgttgtatggtacaagtcagtcttcagtcgtggcatacattctcctccaact |
102 |
Q |
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| T |
44896059 |
tttgacagcttttgattttctaaattcgaatgagaatggattcaacgtcactgtatggtacaagtcaaccaacaagggtgtcactaattttggtccaact |
44896158 |
T |
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| Q |
103 |
acattgttgcgaattcctcgttctgtaaatctggtatatatctaaaacctattttaattgttgcat |
168 |
Q |
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| T |
44896159 |
gcattgttgcgaattcctcgttctataaatttggtatatatctaacacttgttttaatggttgcat |
44896224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 44847271 - 44847326
Alignment:
| Q |
105 |
attgttgcgaattcctcgttctgtaaatctggtatatatctaaaacctattttaat |
160 |
Q |
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| T |
44847271 |
attgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaat |
44847326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 44870781 - 44870819
Alignment:
| Q |
3 |
tttgacagcttttgattttctaaattcaaatgaggatgg |
41 |
Q |
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| T |
44870781 |
tttgacagcttttgattttctaaattcaaatgaggatgg |
44870819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 44870887 - 44870937
Alignment:
| Q |
121 |
cgttctgtaaatctggtatatatctaaaacctattttaattgttgcatatt |
171 |
Q |
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| T |
44870887 |
cgttttgtaaatctggtataaatctaaaacctgttttaattgttgcatatt |
44870937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 44847190 - 44847229
Alignment:
| Q |
3 |
tttgacagcttttgattttctaaattcaaatgaggatgga |
42 |
Q |
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| T |
44847190 |
tttgacagcttttgattttctaaattcgaatgaggatgga |
44847229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 44835737 - 44835779
Alignment:
| Q |
3 |
tttgacagcttttgattttctaaattcaaatgaggatggattc |
45 |
Q |
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| T |
44835737 |
tttgacagttttcgattttctcaattcaaatgaggatggattc |
44835779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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