View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_85 (Length: 246)

Name: NF17260_low_85
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_85
NF17260_low_85
[»] chr5 (7 HSPs)
chr5 (1-239)||(36203120-36203358)
chr5 (88-224)||(9851275-9851410)
chr5 (159-226)||(2022648-2022715)
chr5 (159-232)||(43378120-43378193)
chr5 (114-196)||(29006661-29006743)
chr5 (88-171)||(15205483-15205566)
chr5 (17-85)||(9080655-9080724)
[»] chr3 (7 HSPs)
chr3 (88-238)||(52653924-52654075)
chr3 (5-88)||(33709862-33709945)
chr3 (16-95)||(52653817-52653896)
chr3 (88-238)||(33709981-33710129)
chr3 (145-231)||(16729894-16729980)
chr3 (2-85)||(40574317-40574401)
chr3 (156-228)||(29827115-29827187)
[»] chr7 (6 HSPs)
chr7 (88-238)||(12239438-12239590)
chr7 (119-238)||(37469058-37469178)
chr7 (88-238)||(24870567-24870718)
chr7 (19-84)||(12239628-12239693)
chr7 (156-217)||(5436975-5437036)
chr7 (157-238)||(23756987-23757068)
[»] chr8 (5 HSPs)
chr8 (88-226)||(28695947-28696085)
chr8 (88-191)||(12729541-12729644)
chr8 (2-84)||(12729420-12729502)
chr8 (159-226)||(25953607-25953674)
chr8 (88-215)||(44729228-44729359)
[»] chr1 (9 HSPs)
chr1 (88-238)||(49061524-49061674)
chr1 (88-196)||(49053944-49054052)
chr1 (156-226)||(44524463-44524533)
chr1 (2-84)||(49053823-49053905)
chr1 (156-226)||(21432110-21432180)
chr1 (156-238)||(35624693-35624776)
chr1 (158-217)||(48366498-48366557)
chr1 (156-217)||(29681289-29681350)
chr1 (2-90)||(49061403-49061491)
[»] chr4 (9 HSPs)
chr4 (156-226)||(3415597-3415667)
chr4 (156-237)||(3425145-3425227)
chr4 (159-231)||(18670524-18670597)
chr4 (115-196)||(48779718-48779799)
chr4 (2-85)||(20251439-20251523)
chr4 (156-226)||(18736848-18736918)
chr4 (158-205)||(32429731-32429778)
chr4 (158-228)||(30020297-30020367)
chr4 (146-238)||(20251618-20251710)
[»] scaffold0007 (2 HSPs)
scaffold0007 (2-84)||(217778-217861)
scaffold0007 (156-225)||(217956-218025)
[»] chr2 (2 HSPs)
chr2 (174-232)||(42779878-42779936)
chr2 (2-73)||(34681118-34681190)
[»] chr6 (5 HSPs)
chr6 (2-84)||(11931984-11932066)
chr6 (159-217)||(28611986-28612044)
chr6 (88-171)||(11932104-11932187)
chr6 (159-214)||(21937271-21937326)
chr6 (156-238)||(24075623-24075706)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36203120 - 36203358
Alignment:
Q  1 tacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36203120 tacgagagaatttgtcagaactttattttgtaagctaccattgcagatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttg 36203219  T
Q  101 gcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattc 200  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  36203220 gcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcatcttcatcatcttc 36203319  T
Q  201 ttgatgaagttattgcaacagaccccaacacaggttctg 239  Q
    |||||||||||||| || |||||||||||| ||||||||    
T  36203320 ttgatgaagttattacagcagaccccaacataggttctg 36203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 9851410 - 9851275
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||| ||||| || |||||||| |||| |||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||    
T  9851410 ttgcattcggttggcttaactggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcat 9851312  T
Q  188 cttcatcatattcttgatgaagttattgcaacagacc 224  Q
    ||||||||| || ||||| ||||||||||| ||||||    
T  9851311 cttcatcatctttttgatcaagttattgcagcagacc 9851275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 2022715 - 2022648
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccc 2022648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 43378193 - 43378120
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaacaca 232  Q
    |||||||||||||| ||||| || |||||||||||||| ||| || | ||||||||||| ||||||||||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagaccccaacaca 43378120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 29006661 - 29006743
Alignment:
Q  114 gggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 196  Q
    ||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||  ||||| || |||||||| |||||    
T  29006661 gggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcat 29006743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 15205483 - 15205566
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 171  Q
    |||||||| ||  |||||||||||| || |||||||||| | || ||||||||| |||||||||||  || |||||||| ||||    
T  15205483 ttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcac 15205566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 9080724 - 9080655
Alignment:
Q  17 agaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 85  Q
    ||||||||||||||||| ||||||||| || ||||  || ||||||| |||||||| |||||||| ||||    
T  9080724 agaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaattc 9080655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 52653924 - 52654075
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  52653924 ttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcat 52654023  T
Q  188 cttcatcatattcttgatgaagttattgcaacagacccc-aacacaggttct 238  Q
     |||||||| |||||||| ||||||||||  || ||||| ||||||||||||    
T  52654024 tttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttct 52654075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 33709862 - 33709945
Alignment:
Q  5 agagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctat 88  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||    
T  33709862 agagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 52653817 - 52653896
Alignment:
Q  16 cagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 95  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653817 cagaactttattctgtaaactaccattgtcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 33709981 - 33710129
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    ||||||||||||  |||||||||||  || ||||||| | |||| ||||||||| |||||||||||  ||||||||| ||||||| ||||| |||||| |    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttctt 33710079  T
Q  188 cttcatcatattcttgatgaagttattgcaacagaccccaacacaggttct 238  Q
    | | ||||| |||||| | ||| ||||||| ||||||||||||||||||||    
T  33710080 cat-atcattttcttggtcaagatattgcagcagaccccaacacaggttct 33710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 16729894 - 16729980
Alignment:
Q  145 cacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaacac 231  Q
    |||||||||  || |||| ||||||||| || || ||||||||||||||| | || ||||| ||||||||||| |||||||| ||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcagcagaccccgacac 16729980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 40574401 - 40574317
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 85  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| | ||||| |||  |||||| |||||||||||||||| |||||    
T  40574401 acgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattc 40574317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 29827187 - 29827115
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaa 228  Q
    |||||||||||| || | ||||| ||  ||||||||||||| |||||| |  |||||||||| ||||||||||    
T  29827187 tggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagcagaccccaa 29827115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 12239590 - 12239438
Alignment:
Q  88 ttgcatccggtttg-cataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttca 186  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||  || |||||||||||||| ||||| || ||||    
T  12239590 ttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattca 12239491  T
Q  187 tcttcatcatattcttgatgaagttattgcaacagacc-ccaacacaggttct 238  Q
    || ||||||| ||||| || ||||||||||| || ||| |||||||| |||||    
T  12239490 tcatcatcatcttcttaatcaagttattgcagcaaacctccaacacaagttct 12239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 37469058 - 37469178
Alignment:
Q  119 aatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaa 218  Q
    |||| ||| |||| ||||||||| ||||||||| |  || |||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||      
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctg 37469157  T
Q  219 caga-ccccaacacaggttct 238  Q
    || | ||||||||||||||||    
T  37469158 caaacccccaacacaggttct 37469178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 24870567 - 24870718
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||||  || |||| ||| |   ||||||||||||| |  |||||| ||||  ||    
T  24870567 ttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtcccatacaagatgtggaatttatgtgtattattcatcatgtctat 24870666  T
Q  188 cttcatcatattcttgatgaagttattgcaacaga-ccccaacacaggttct 238  Q
    ||||||||| ||||| || ||||||||||| || | |||||||| |||||||    
T  24870667 cttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttct 24870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 12239693 - 12239628
Alignment:
Q  19 aactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 84  Q
    ||||||||| || || |||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  12239693 aactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatt 12239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 5436975 - 5437036
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 217  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  5436975 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 23757068 - 23756987
Alignment:
Q  157 ggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaacacaggttct 238  Q
    ||||||||||| |||  ||||| ||||||||||||||||| |||||  | ||||| ||||  || ||||||||| |||||||    
T  23757068 ggaatttatgttcactcttcatcatgttcatcttcatcattttcttagtcaagttcttgctccaaaccccaacaaaggttct 23756987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 28696085 - 28695947
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    ||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||||| |||||||||||  ||||||||||| |||   ||||| ||||||||    
T  28696085 ttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcatgttcat 28695986  T
Q  188 cttcatcatattcttgatgaagttattgcaacagacccc 226  Q
     |||||||| |||||| | |||||||||||||| |||||    
T  28695985 attcatcatcttcttggtcaagttattgcaacaaacccc 28695947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 12729541 - 12729644
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||||||||| ||||||||||||  ||||||||| || |||| ||||||||| ||||||||| |  ||||||| ||||| ||  ||||| ||||||||    
T  12729541 ttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcat 12729640  T
Q  188 cttc 191  Q
    ||||    
T  12729641 cttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 12729420 - 12729502
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 84  Q
    ||||||||| ||| ||||||||||||  |||| |||| ||||||||||  |||| |||||| |||||||||| ||||||||||    
T  12729420 acgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaagtcatgtcaaggatt 12729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 25953607 - 25953674
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    |||||||||||||| ||||| || ||||||||||| || |||||| | ||||||||||| ||||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccc 25953674  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 44729228 - 44729359
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattca----ttatgt 183  Q
    |||||||||||| |||||||| |   ||| |||| |||| |||| ||||||||  |||||||||||  ||||||||||||||||  ||||    | ||||    
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgt 44729327  T
Q  184 tcatcttcatcatattcttgatgaagttattg 215  Q
    |||| ||||| || |||||||| |||||||||    
T  44729328 tcattttcattatcttcttgatcaagttattg 44729359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 49061524 - 49061674
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||||  ||| |||||||||||| ||||||||||||| ||||   ||||||  |||||||||||  | ||||||||||||||| ||||| ||||||||    
T  49061524 ttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcat 49061623  T
Q  188 cttcatcatattcttgatgaagttattgcaacagaccccaacacaggttct 238  Q
    |||| |||| || ||| | || |||||||| |||||||||||||| |||||    
T  49061624 cttcttcatctttttggtaaaattattgcagcagaccccaacacaagttct 49061674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 49053944 - 49054052
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 187  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||| ||||||||  |||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  49053944 ttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcat 49054043  T
Q  188 cttcatcat 196  Q
    |||| ||||    
T  49054044 cttcttcat 49054052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 44524463 - 44524533
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  44524463 tggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccc 44524533  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 49053823 - 49053905
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 84  Q
    ||||| ||| ||| |||||||||||||||||| |||||||||||||||  |||| |||||| |||||||||||||||||||||    
T  49053823 acgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaagtcacgtcaaggatt 49053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21432110 - 21432180
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    ||||||||||||||||| ||||  ||||||||||||||||| |||||| | ||||||||||| ||||||||    
T  21432110 tggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 21432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 35624776 - 35624693
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacaga-ccccaacacaggttct 238  Q
    ||||||||||||||||| ||| | || |||||||||||||| |||||| | ||||||||||| |||| |||||||||| |||||    
T  35624776 tggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttct 35624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 48366498 - 48366557
Alignment:
Q  158 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 217  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  48366498 gaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 29681350 - 29681289
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 217  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  29681350 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 49061403 - 49061491
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 90  Q
    ||||| ||| ||| || ||||||||| ||||| |||||||||||||||   ||| |||||| |||||| ||||||||||||||| ||||    
T  49061403 acgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaatcacgtcaaggattccattg 49061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 3415597 - 3415667
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||||||| ||||||||    
T  3415597 tggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 3415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 3425145 - 3425227
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacaga-ccccaacacaggttc 237  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||| | ||||||||||| |||| |||||||||||||||    
T  3425145 tggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 18670597 - 18670524
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagac-cccaacac 231  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||||||||||||||| ||||||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacac 18670524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 48779799 - 48779718
Alignment:
Q  115 ggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 196  Q
    |||||||||||| |||| ||||||||  |||||||||||  || ||||||| |||||| ||||| ||||||||||| |||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 20251439 - 20251523
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 85  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| ||||||||||||||||||| || |||| ||| |||| |||||    
T  20251439 acgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattc 20251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 18736918 - 18736848
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc 226  Q
    ||||||||||||||||| ||||| | ||||||||| ||||| |||||||  |||||||| || ||||||||    
T  18736918 tggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccc 18736848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 32429731 - 32429778
Alignment:
Q  158 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgat 205  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  32429731 gaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgat 32429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 30020297 - 30020367
Alignment:
Q  158 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaa 228  Q
    |||||||| |||||| ||||| ||  ||||||||||||| |||||| | ||||||||||| |||| |||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcagatcccaa 30020367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 20251618 - 20251710
Alignment:
Q  146 acacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaacacaggttct 238  Q
    ||||||||  || |||||||||| ||  ||||| ||||||||||||||||| |||||  | ||  |||| || ||||||||||||||| ||||    
T  20251618 acacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagaccccaacacagattct 20251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 217778 - 217861
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 84  Q
    ||||||||| ||| |||||| ||||||||||| ||||||||| |||||||||||| |||||| ||||||||| | |||||||||    
T  217778 acgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 217956 - 218025
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccc 225  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||  | |||||||||||| ||||||    
T  217956 tggaatttatgtgcactattcattatgttcatcttcatcatcttttttgtcaagttattgcaaaagaccc 218025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 42779936 - 42779878
Alignment:
Q  174 ttcattatgttcatcttcatcatattcttgatgaagttattgcaacagaccccaacaca 232  Q
    ||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||    
T  42779936 ttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagaccccaacaca 42779878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 34681190 - 34681118
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtca 73  Q
    ||||||||| ||| || |||||||||  |||| ||| ||||| ||||||| ||||||||||| ||||||||||    
T  34681190 acgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 11931984 - 11932066
Alignment:
Q  2 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 84  Q
    ||||||||||||| ||||| |||||| | ||| ||||||||||||||| ||||| ||||||   ||||||||| |||||||||    
T  11931984 acgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatcaaggatt 11932066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 28612044 - 28611986
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 217  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||||    
T  28612044 aatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgca 28611986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  88 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 171  Q
    |||||||||||| |||||||| ||| ||||||||| ||| |||| ||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 21937326 - 21937271
Alignment:
Q  159 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttatt 214  Q
    |||||||||||||| ||||| || |||||||||||||| |||||| | ||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 24075706 - 24075623
Alignment:
Q  156 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcaacagacccc-aacacaggttct 238  Q
    |||||||||| |||||| ||  | || |||||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||||    
T  24075706 tggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttct 24075623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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