View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_88 (Length: 241)

Name: NF17260_low_88
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_88
NF17260_low_88
[»] scaffold0180 (1 HSPs)
scaffold0180 (110-222)||(11838-11950)
[»] chr4 (5 HSPs)
chr4 (110-222)||(17143446-17143558)
chr4 (113-208)||(13897868-13897963)
chr4 (112-208)||(14049796-14049892)
chr4 (113-208)||(30148132-30148227)
chr4 (96-165)||(41946012-41946081)
[»] chr6 (13 HSPs)
chr6 (110-222)||(1558-1671)
chr6 (110-222)||(8517-8630)
chr6 (96-183)||(23957057-23957144)
chr6 (96-183)||(31021491-31021578)
chr6 (96-183)||(23225629-23225716)
chr6 (96-180)||(31021356-31021440)
chr6 (112-208)||(5109478-5109574)
chr6 (116-183)||(18138742-18138807)
chr6 (120-179)||(17026147-17026206)
chr6 (112-182)||(19471112-19471182)
chr6 (112-155)||(29266585-29266628)
chr6 (190-222)||(17026197-17026229)
chr6 (112-168)||(22910116-22910172)
[»] scaffold1555 (1 HSPs)
scaffold1555 (96-183)||(358-445)
[»] chr8 (6 HSPs)
chr8 (96-183)||(18023247-18023334)
chr8 (96-183)||(8413519-8413606)
chr8 (96-183)||(36601545-36601632)
chr8 (96-178)||(11775912-11775994)
chr8 (112-213)||(24980299-24980400)
chr8 (134-189)||(19990109-19990164)
[»] chr5 (4 HSPs)
chr5 (96-183)||(33472334-33472421)
chr5 (112-208)||(26754862-26754957)
chr5 (110-213)||(21624932-21625034)
chr5 (112-189)||(25014734-25014810)
[»] chr3 (6 HSPs)
chr3 (96-183)||(42721-42808)
chr3 (96-183)||(16324311-16324398)
chr3 (167-222)||(3804020-3804075)
chr3 (113-189)||(12854777-12854853)
chr3 (96-134)||(3804069-3804107)
chr3 (134-213)||(13035950-13036029)
[»] chr2 (6 HSPs)
chr2 (96-183)||(20950647-20950734)
chr2 (112-196)||(38928796-38928880)
chr2 (112-208)||(23003282-23003378)
chr2 (113-183)||(23149782-23149851)
chr2 (113-183)||(23561572-23561641)
chr2 (163-208)||(44090041-44090086)
[»] chr1 (5 HSPs)
chr1 (96-183)||(634775-634862)
chr1 (113-190)||(29543028-29543105)
chr1 (112-208)||(13228080-13228176)
chr1 (113-168)||(25091197-25091252)
chr1 (133-189)||(24476515-24476570)
[»] scaffold0001 (2 HSPs)
scaffold0001 (96-183)||(176986-177072)
scaffold0001 (96-156)||(171309-171369)
[»] scaffold0057 (1 HSPs)
scaffold0057 (112-208)||(968-1064)
[»] chr7 (13 HSPs)
chr7 (112-208)||(16107625-16107721)
chr7 (110-173)||(11311288-11311350)
chr7 (112-182)||(12555623-12555692)
chr7 (112-189)||(42042339-42042415)
chr7 (112-168)||(14039805-14039861)
chr7 (112-168)||(14349835-14349891)
chr7 (112-207)||(16069409-16069504)
chr7 (112-207)||(16072974-16073069)
chr7 (112-173)||(14944882-14944943)
chr7 (112-173)||(15372475-15372536)
chr7 (112-182)||(16667379-16667448)
chr7 (112-182)||(17641749-17641818)
chr7 (113-189)||(12695766-12695841)
[»] scaffold0169 (1 HSPs)
scaffold0169 (110-198)||(7150-7237)
[»] scaffold0352 (1 HSPs)
scaffold0352 (110-208)||(4268-4365)
[»] scaffold0106 (3 HSPs)
scaffold0106 (112-198)||(37286-37371)
scaffold0106 (112-171)||(30966-31025)
scaffold0106 (162-198)||(29692-29728)
[»] scaffold0004 (1 HSPs)
scaffold0004 (112-189)||(385356-385432)
[»] scaffold1765 (1 HSPs)
scaffold1765 (112-189)||(661-737)
[»] scaffold0371 (1 HSPs)
scaffold0371 (113-189)||(5921-5996)
[»] scaffold0149 (1 HSPs)
scaffold0149 (113-189)||(27479-27554)
[»] scaffold1340 (1 HSPs)
scaffold1340 (112-189)||(567-643)
[»] scaffold0335 (2 HSPs)
scaffold0335 (110-167)||(7412-7469)
scaffold0335 (113-189)||(2397-2471)
[»] scaffold0480 (1 HSPs)
scaffold0480 (113-189)||(1659-1734)
[»] scaffold0395 (1 HSPs)
scaffold0395 (120-183)||(6579-6641)
[»] scaffold0064 (1 HSPs)
scaffold0064 (112-182)||(69174-69243)
[»] scaffold0253 (2 HSPs)
scaffold0253 (113-173)||(6452-6513)
scaffold0253 (113-173)||(15877-15938)
[»] scaffold0037 (1 HSPs)
scaffold0037 (112-182)||(71113-71181)
[»] scaffold0003 (2 HSPs)
scaffold0003 (132-190)||(80096-80153)
scaffold0003 (132-190)||(99831-99888)
[»] scaffold0790 (1 HSPs)
scaffold0790 (113-172)||(5680-5738)
[»] scaffold0600 (1 HSPs)
scaffold0600 (113-189)||(946-1020)


Alignment Details
Target: scaffold0180 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 11950 - 11838
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11950 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaat 11851  T
Q  210 tattaagtgggag 222  Q
    |||||||||||||    
T  11850 tattaagtgggag 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 17143558 - 17143446
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaat 209  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143558 atttagaataatgtgagtaatagaattaattgcagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaat 17143459  T
Q  210 tattaagtgggag 222  Q
    |||||||||||||    
T  17143458 tattaagtgggag 17143446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 13897868 - 13897963
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  13897868 tagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaagaaattaaagggagttaa 13897963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 14049892 - 14049796
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  14049892 ttagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaaggaattaaagggagttaa 14049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 30148227 - 30148132
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  30148227 tagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaaggaattaaagggagttaa 30148132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 41946012 - 41946081
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41946012 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaat 41946081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 1671 - 1558
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttggggg-ttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1671 atttagaataatgtgagaaatataattaattggagtcttggggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 1572  T
Q  209 ttattaagtgggag 222  Q
    ||||||||||||||    
T  1571 ttattaagtgggag 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 8630 - 8517
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttggggg-ttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8630 atttagaataatgtgagaaatataattaattggagtcttggggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 8531  T
Q  209 ttattaagtgggag 222  Q
    ||||||||||||||    
T  8530 ttattaagtgggag 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 23957144 - 23957057
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23957144 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 23957057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 31021491 - 31021578
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31021491 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 31021578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 23225629 - 23225716
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23225629 tagaataagtgggaatttagaataatgtgagaaataaaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 23225716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 31021356 - 31021440
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31021356 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgtgggttttattttaattaatagaaattaagt 31021440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 5109478 - 5109574
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  5109478 ttagaataatgtgagaattataattaattggagtcttggaggttttattttaattaatagaaattaagtgggagttaaaggaattaaagggagttaa 5109574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 18138807 - 18138742
Alignment:
Q  116 aataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||| ||||||| || |||||| |||||||||||| ||||||||||||||    
T  18138807 aataatgtgagaaatagaattatttggagt-tttggggttatattttaattaa-agaaattaagtggg 18138742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 17026147 - 17026206
Alignment:
Q  120 atgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaag 179  Q
    ||||||||| | |||||||||||||| ||||||||| ||||  |||||||||||||||||    
T  17026147 atgtgagaatttgaattaattggagttttgggggttatattggaattaatagaaattaag 17026206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 19471112 - 19471182
Alignment:
Q  112 ttagaataatgtgagaaatagaattaat-tggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    ||||||||||| |||||||||||||| | |||||| ||||||||| |||||||||||| || ||||||||||    
T  19471112 ttagaataatgagagaaatagaattagtatggagttttgggggttatattttaattaa-aggaattaagtgg 19471182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 29266628 - 29266585
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggtt 155  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||    
T  29266628 ttagaataatgtgagaaatataattatttggagttttgggggtt 29266585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 17026197 - 17026229
Alignment:
Q  190 agaaattaagaggagttaattattaagtgggag 222  Q
    |||||||||||||||||||||||||||| ||||    
T  17026197 agaaattaagaggagttaattattaagtaggag 17026229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 22910116 - 22910172
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaa 168  Q
    |||||||||| ||||||||||||||| ||||| |  | |||||| ||||||||||||    
T  22910116 ttagaataatatgagaaatagaattatttggaattctaggggttatattttaattaa 22910172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1555 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1555
Description:

Target: scaffold1555; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 445 - 358
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  445 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 18023247 - 18023334
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18023247 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 18023334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 8413519 - 8413606
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8413519 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattacgtggg 8413606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 36601632 - 36601545
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601632 tagaataagtgggaaattagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 36601545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 11775994 - 11775912
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11775994 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaataaatagaaattaa 11775912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 24980400 - 24980299
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaatta 211  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||| ||    
T  24980400 ttagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaaggaattaaagggagttaagta 24980301  T
Q  212 tt 213  Q
    ||    
T  24980300 tt 24980299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 19990164 - 19990109
Alignment:
Q  134 attaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  19990164 attaattggagttttgggggttttattagaattaatagaaattaagtgggagttaa 19990109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 33472334 - 33472421
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33472334 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaataaatagaaattaagtggg 33472421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 26754957 - 26754862
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  26754957 ttagaataatgtgagaattata-ttaattggagtcttgggggctttattttaattaatagaaattaagtgggagttaaagaaattaaagggagttaa 26754862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 21625034 - 21624932
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa-gaaattaagaggagttaa 208  Q
    |||||||||||||||||||||||||||| ||| ||| || |||||| ||||||||||||||| ||||||||||| |||||| ||||| ||| ||||||||    
T  21625034 atttagaataatgtgagaaatagaattatttgaagt-tttggggttatattttaattaatag-aattaagtgggagttaaatgaaataaaggggagttaa 21624937  T
Q  209 ttatt 213  Q
     ||||    
T  21624936 gtatt 21624932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 25014810 - 25014734
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||||||||||| ||  |||| ||||| | ||||||||| ||||||||||| ||  ||||||||||| |||||    
T  25014810 ttagaataatgtgagaattattattatttggaattttgggggttatattttaattagta-taattaagtgggagttaa 25014734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 42808 - 42721
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42808 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatataaattaagtggg 42721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 16324311 - 16324398
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16324311 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaataaatagaaattaagtggg 16324398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 3804075 - 3804020
Alignment:
Q  167 aatagaaattaagtgggggttaaagaaattaagaggagttaattattaagtgggag 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3804075 aatagaaattaagtgggggttaaagtaattaagaggagttaattattaagtgggag 3804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 12854777 - 12854853
Alignment:
Q  113 tagaataatgtgagaaatagaattaat-tggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||||||||||||||||||| | || ||| ||||||||| |||||||||||| || |||||||| || |||||    
T  12854777 tagaataatgtgagaaatagaattagtatgaagttttgggggttatattttaattaa-aggaattaagtaggagttaa 12854853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 3804107 - 3804069
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaa 134  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  3804107 tagaataagtgggagtttagaatgatgtgagaaatagaa 3804069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 13035950 - 13036029
Alignment:
Q  134 attaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa-gaaattaagaggagttaattatt 213  Q
    |||| ||||||| ||||||||| ||||||||||| ||  ||||||||||| |||||| ||||| ||| |||||||| ||||    
T  13035950 attatttggagttttgggggttatattttaattagta-taattaagtgggagttaaatgaaataaaggggagttaagtatt 13036029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 20950647 - 20950734
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20950647 tagaataaatgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 20950734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 38928796 - 38928880
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaatt 196  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38928796 ttagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaagaaatt 38928880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 23003378 - 23003282
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||| || || ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  23003378 ttagaataatgtgaaaattataattaattgaagtcttggggattttattttaattaatagaaattaagtgggagttaaaggaattaaagggagttaa 23003282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 23149851 - 23149782
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||| ||||||| |||   ||| |||||||||||| || |||||||||||    
T  23149851 tagaataatgtgagaaatagaattatttggagttttgcctgttatattttaattaa-aggaattaagtggg 23149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 23561641 - 23561572
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    ||||||||||||||||||||||||| ||||||| |||   ||| |||||||||||| || |||||||||||    
T  23561641 tagaataatgtgagaaatagaattatttggagttttgcctgttatattttaattaa-aggaattaagtggg 23561572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 44090041 - 44090086
Alignment:
Q  163 aattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  44090041 aattaatagaaattaagtgggagttaaaggaattaaagggagttaa 44090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 634775 - 634862
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  634775 tagaataagtgggaatttagaataatgtgagaaatataattaattggagtcttgggggttttattttaattaatagaaattaagtggg 634862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 29543105 - 29543028
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa 190  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29543105 tagaataatgtgagaattataattaattggagtcttgggggttttattttaattaatagaaattaagtgggagttaaa 29543028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 13228176 - 13228080
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||||||  ||||||||    
T  13228176 ttagaataatgtgagaattataattaattggagtcttgagggttttattttaattaatagaaattaagtgggagttaaatgaattaaagggagttaa 13228080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 25091197 - 25091252
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaa 168  Q
    ||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||    
T  25091197 tagaataatgtgagaaatagaattatttggagttttggaggttatattttaattaa 25091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 24476570 - 24476515
Alignment:
Q  133 aattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||| |||||    
T  24476570 aattatttggagttttgggggttatattttaattaatag-aattaagtgggagttaa 24476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 177072 - 176986
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  177072 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttggggg-tttattttaattaatagaaattaagtggg 176986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 171369 - 171309
Alignment:
Q  96 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttt 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  171369 tagaataagtgggaatttagaataatgtgagaaatagaattaattggagtcttgggggttt 171309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 968 - 1064
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  968 ttagaataatgtgagaattataattaattggagtcttggggattttattttaattaatagaaattaagtgggagttaaagaaattaaagggagttaa 1064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 16107625 - 16107721
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggg-gttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  16107625 ttagaataatgtgagaattataattaattggagtcttggggggttttattttaattaatagaaattaagtgggagttaaaggaattaa-aggagttaa 16107721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 11311350 - 11311288
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaa 173  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  11311350 atttagaataatgtgagaaatagaattaattggagtctt-agggttttattttaattaatagaa 11311288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 12555692 - 12555623
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| || ||||||||||    
T  12555692 ttagaataatgtgagaaatagaattatttggagttttgggggttatattttaattaa-aggaattaagtgg 12555623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 42042415 - 42042339
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||| |||||||||| ||||| ||||||| ||||||||| ||||||||||||||  ||||||||||| |||||    
T  42042415 ttagaataaagtgagaaataaaattatttggagttttgggggttatattttaattaata-taattaagtgggagttaa 42042339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 14039861 - 14039805
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaa 168  Q
    |||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||    
T  14039861 ttagaataatgtgagaaatagaattatttggagttttaggggttatattttaattaa 14039805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 14349891 - 14349835
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaa 168  Q
    |||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||    
T  14349891 ttagaataatgtgagaaatagaattatttggagttttaggggttatattttaattaa 14349835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 16069409 - 16069504
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa-gaaattaagaggagtta 207  Q
    ||||||||||||||||| ||  |||| ||||||| ||||||||| ||||||||||||||| ||||||||||  |||||| ||||| ||| |||||||    
T  16069409 ttagaataatgtgagaattattattatttggagttttgggggttatattttaattaatag-aattaagtggaagttaaatgaaataaaggggagtta 16069504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 16072974 - 16073069
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa-gaaattaagaggagtta 207  Q
    ||||||||||||||||| ||  |||| ||||||| ||| ||||| ||||||||||||||| ||||||||||| |||||| ||||| ||| |||||||    
T  16072974 ttagaataatgtgagaattattattatttggagttttgcgggttatattttaattaatag-aattaagtgggagttaaatgaaataaaggggagtta 16073069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 14944882 - 14944943
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaa 173  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||| | || ||||||||||||    
T  14944882 ttagaataatgttagaaatataattaattggagttttgggggttatgttataattaatagaa 14944943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 15372475 - 15372536
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaa 173  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||| | || ||||||||||||    
T  15372475 ttagaataatgttagaaatataattaattggagttttgggggttatgttataattaatagaa 15372536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 16667379 - 16667448
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    |||||||||||||||||||| ||||| || |||| || |||||| ||||||||||||  ||||||||||||    
T  16667379 ttagaataatgtgagaaatataattatttagagttttaggggttatattttaattaa-ggaaattaagtgg 16667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 17641749 - 17641818
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    |||||||||||||||||||| ||||| || |||| || |||||| ||||||||||||  ||||||||||||    
T  17641749 ttagaataatgtgagaaatataattatttagagttttaggggttatattttaattaa-ggaaattaagtgg 17641818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 12695841 - 12695766
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||||||||||| ||  |||| ||||||| |||| |||| ||||||||||| ||  ||||||||||| |||||    
T  12695841 tagaataatgtgagaattattattatttggagttttggaggttatattttaattagta-taattaagtgggagttaa 12695766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 7237 - 7150
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaa 198  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| ||||||| ||| ||||||||||||||    
T  7237 atttagaataatgtgagaaatagaattatttggagttttgggggttatattataattaatag-aattaagagggagttaaagaaattaa 7150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 4268 - 4365
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaagaggagttaa 208  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||| |||| |||||||||| ||||||| ||| ||||||||||||||  ||||||||    
T  4268 atttagaataatgtgagaaatagaattatttgaagttttgggggttatattataattaatag-aattaagagggagttaaagaaattaaagggagttaa 4365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 37371 - 37286
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaagaaattaa 198  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||||||| | |||||||||||||||| || |||||||||||    
T  37371 ttagaataatgtgagaattataattaattggagtcttcggggttttattttaact-atagaaattaagtgggagtaaaagaaattaa 37286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 31025 - 30966
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatag 171  Q
    ||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  31025 ttagaattatgtgagaattataattaattagagtcttgggggttttattttaattaatag 30966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 29728 - 29692
Alignment:
Q  162 taattaatagaaattaagtgggggttaaagaaattaa 198  Q
    |||||||||||||||||||||| || |||||||||||    
T  29728 taattaatagaaattaagtgggagtaaaagaaattaa 29692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 385432 - 385356
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||| |||||    
T  385432 ttagaataatgtgagaaatagaattatttggagttttgggggttatattttaattaa-agaaattaagtgggagttaa 385356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1765 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1765
Description:

Target: scaffold1765; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 737 - 661
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||| ||||||||||| |||||    
T  737 ttagaataatgtgagaaatagaattattcggagttttgggggttatattttaattaatag-aattaagtgggagttaa 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 5921 - 5996
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||| |||||    
T  5921 tagaataatgtgagaaataaaattatttggagttttgggggttatattttaattaatag-aattaagtgggagttaa 5996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 27554 - 27479
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||| |||||    
T  27554 tagaataatgtgagaaataaaattatttggagttttgggggttatattttaattaatag-aattaagtgggagttaa 27479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1340 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1340
Description:

Target: scaffold1340; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 643 - 567
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||  | ||||||||||| |||||    
T  643 ttagaataatgtgagaaatagaattatttggagttttaggggttatattttaattaa-gggaattaagtgggagttaa 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 7412 - 7469
Alignment:
Q  110 atttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaatta 167  Q
    |||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||    
T  7412 atttagaataatgtgagaaatagaataatttggagttttgggggttatattttaatta 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 2397 - 2471
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||| ||||||| |||||||| ||||||| ||||||||| |||||||||||| || ||||||||||| |||||    
T  2397 tagaataa-gtgagaattagaattatttggagttttgggggttatattttaattaa-aggaattaagtgggagttaa 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 1734 - 1659
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||| || ||| ||||||| |||||    
T  1734 tagaataatgtgagaaatagaattagttggagttttgggagttatattttaattaa-aggaatcaagtgggagttaa 1659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 6579 - 6641
Alignment:
Q  120 atgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtggg 183  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||||||| || |||||||||||    
T  6579 atgtgagaaatagaattatttggagttttgggggttatattttaattaa-aggaattaagtggg 6641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 69243 - 69174
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||| || ||||||||| || ||||||||||    
T  69243 ttagaataatgtgagaaatagaattatttggagttttgagggttatactttaattaa-aggaattaagtgg 69174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 6513 - 6452
Alignment:
Q  113 tagaataatgtgagaaa-tagaattaattggagtcttgggggttttattttaattaatagaa 173  Q
    ||||||||||||||||| |||||||| ||||||| || |||||| |||||||||||||||||    
T  6513 tagaataatgtgagaaaatagaattatttggagttttaggggttatattttaattaatagaa 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 15938 - 15877
Alignment:
Q  113 tagaataatgtgagaaa-tagaattaattggagtcttgggggttttattttaattaatagaa 173  Q
    ||||||||||||||||| |||||||| ||||||| || |||||| |||||||||||||||||    
T  15938 tagaataatgtgagaaaatagaattatttggagttttaggggttatattttaattaatagaa 15877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 71113 - 71181
Alignment:
Q  112 ttagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgg 182  Q
    |||||||||||||||||||||||||| ||||||| || |||||| || ||||||||| || ||||||||||    
T  71113 ttagaataatgtgagaaatagaattatttggagt-tttggggttatactttaattaa-aggaattaagtgg 71181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 80096 - 80153
Alignment:
Q  132 gaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa 190  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||| ||| ||||||    
T  80096 gaattaattggagttttgggggttttattataattaatag-aattaagagggagttaaa 80153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 99831 - 99888
Alignment:
Q  132 gaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaaa 190  Q
    |||||||||||||| |||||||| ||||| |||||||||| ||||||| ||| ||||||    
T  99831 gaattaattggagttttgggggtcttattataattaatag-aattaagagggagttaaa 99888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 5738 - 5680
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaataga 172  Q
    |||||||| ||||||| ||  |||||||||||| ||||||||| ||||||||||||||||    
T  5738 tagaataa-gtgagaattattattaattggagttttgggggttatattttaattaataga 5680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 1020 - 946
Alignment:
Q  113 tagaataatgtgagaaatagaattaattggagtcttgggggttttattttaattaatagaaattaagtgggggttaa 189  Q
    |||||||| ||||||| || ||||| ||||||| || |||||| |||||||||||| || ||||||||||| |||||    
T  1020 tagaataa-gtgagaattataattatttggagttttaggggttatattttaattaa-aggaattaagtgggagttaa 946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University