View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_9 (Length: 583)
Name: NF17260_low_9
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 3306217 - 3306777
Alignment:
| Q |
19 |
catttctctagagtgagagcatagttgcatgcatgccctattatttacatgatggtgacatcttaattttcatgtgaggtgaaattagttaccacacaga |
118 |
Q |
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| T |
3306217 |
catttctctagagtgagagcatagttgcatgcatgccctattatttacatgatggtgacatcttaattttcatgtgaggtgaaattagttaccacacaga |
3306316 |
T |
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| Q |
119 |
tattgcaatagccaaccgtacacatgctggaaaatgttggtcatgctttgattgtttttctaactaatttatagattcttgaccttagagagacatgaaa |
218 |
Q |
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| T |
3306317 |
tattgcaatagccaaccgtacacatgctggaaaatgttggtcatgctttgattgtttttctaactaatttatagattattgaccttagagagacatgaaa |
3306416 |
T |
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| Q |
219 |
aggtggaagagaagaataggtaagtacatatgatggaaacatgtgataaagactagcttggaagttaagcacattggattgaagttagctggagctgtct |
318 |
Q |
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| T |
3306417 |
aggtggaagagaagaataggtaagtacatatgatggaaacatgtgataaagactagcttggaaattaagcacattggattgaagctagctggagctgtct |
3306516 |
T |
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| Q |
319 |
aaagtatttataaggtgactcttgcgacaacaataaggttgatctggctttatttacacaatacttaaagtagtgcaaatgatatttgattgttgcatta |
418 |
Q |
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| T |
3306517 |
aaagtaattataaggtgactcttgcgacaacaataaggttgatctggctttatttacacaatacttaaagtagtgcaaatgatatttgattgttgcatta |
3306616 |
T |
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| Q |
419 |
tttgggggtttaattagaacaggaagctattgcaacttactttcttcagtatgaaatgtaaacaaaacttggccaacttagatatgttatgaaagatggt |
518 |
Q |
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| T |
3306617 |
tttgggggtttaattagaacaagaagctattgcaacttactttcttcggtatgaaatgtaaacaaaacttgaccaacttagatatgttatgaaagatggt |
3306716 |
T |
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| Q |
519 |
tgatcatatttaatttatg------caatttcaatattaataattaggcttattacctatg |
573 |
Q |
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| T |
3306717 |
tgatcatatttaatttatgcaatttcaatttcaatattaataattaggcttattatctatg |
3306777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 3308068 - 3308176
Alignment:
| Q |
210 |
gacatgaaaaggtggaagagaagaataggtaagtacatatgatggaaacatgtgataaagactagct-tggaagttaagcacattggattgaagttagct |
308 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||| | || |||||||||||||||||||| ||||| |
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| T |
3308068 |
gacataaaaaggtggaagagaagaataggtaagtacatgtgatggcaacatgtgatagagaccagctaagaaaattaagcacattggattgaagctagct |
3308167 |
T |
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| Q |
309 |
ggagctgtc |
317 |
Q |
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| T |
3308168 |
agagctgtc |
3308176 |
T |
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