View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_99 (Length: 214)
Name: NF17260_low_99
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 9348743 - 9348594
Alignment:
| Q |
52 |
aactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagag |
151 |
Q |
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| T |
9348743 |
aactcaacattctattacctctccaaacgcactctcgtccttgtcaggccaccacaacatggaaaaaccccaattcatcgtcgtccttggttgattagag |
9348644 |
T |
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| Q |
152 |
ttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
201 |
Q |
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| T |
9348643 |
ttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
9348594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 9370397 - 9370248
Alignment:
| Q |
52 |
aactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagag |
151 |
Q |
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| T |
9370397 |
aactcaccattatgttacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagag |
9370298 |
T |
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| Q |
152 |
ttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
201 |
Q |
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| T |
9370297 |
ttacacaaaactcacatggaaaaactaaattcttcaacccagtcatctca |
9370248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 9341396 - 9341314
Alignment:
| Q |
116 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatc |
198 |
Q |
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| T |
9341396 |
aaaccctaattcctcgtcgtccttggttgattagatttactcaaaactcacatggcaaaaccaaactctttcacccactcatc |
9341314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 9408006 - 9407962
Alignment:
| Q |
132 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaac |
176 |
Q |
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| T |
9408006 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaac |
9407962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 9426213 - 9426170
Alignment:
| Q |
132 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
175 |
Q |
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| T |
9426213 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9426170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 9441257 - 9441300
Alignment:
| Q |
132 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
175 |
Q |
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| T |
9441257 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9441300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 9417210 - 9417167
Alignment:
| Q |
132 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
175 |
Q |
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| T |
9417210 |
tcgtccttggttgatcagagttacccaaaactcacatggcaaaa |
9417167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 9353587 - 9353538
Alignment:
| Q |
116 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactca |
165 |
Q |
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| T |
9353587 |
aaaccctaattcgtcgtcggccttggttgatacgaattacccaaaactca |
9353538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 250825 - 250861
Alignment:
| Q |
129 |
tcgtcgtccttggttgattagagttacacaaaactca |
165 |
Q |
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| T |
250825 |
tcgtcgtccttggttgtttagaattacacaaaactca |
250861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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