View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_high_12 (Length: 300)
Name: NF17261_high_12
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 28469909 - 28469636
Alignment:
| Q |
14 |
ttcttagagtaaaacgcaataataataattttgacttcggctaaaggtaagtgaaatttgtccaaaaattgtttgtgttatgaagtgaatgatttggata |
113 |
Q |
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| T |
28469909 |
ttcttagagtaaaacgcaatagtaat---tttgacttcggttaaaggtaaatgaaatttgttcaaaaattgtttgtgtcatgaagtgaataatttggata |
28469813 |
T |
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| Q |
114 |
ctttcgatcgattcaaaattaacggatactcatttatctaaccacttgagtaatgtaa------tgagtttctttctttgtgagacgata-----tttgt |
202 |
Q |
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| T |
28469812 |
gtttcgatcgattcaaaatt-acggatactcatttatctaaccacttgagtaatgtaatgagtttgagtttctttctttgtgagacgatattggttttgt |
28469714 |
T |
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| Q |
203 |
tggtgtttttggatgctacattcttaactaatgttgctgatataataaataaatgtaagaaggatataaatatttctttac |
283 |
Q |
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| T |
28469713 |
tggtgtttttggatgctacattcttaactaatgttgctgat---ataaataaatgtaagaaggatataaatatttctttac |
28469636 |
T |
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