View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17261_high_18 (Length: 230)
Name: NF17261_high_18
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 41781932 - 41781736
Alignment:
| Q |
16 |
atgaatctaacaaactcaacttggtcaaaataaaaacaacttgtaaataaaggggggaagaaaaagcaacaacattgataaatcataacaagaagagaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41781932 |
atgaatctaacaaactcaacttggtcaaaataaaa-caacttgtaaataaaggggggaagaaaaagcaacaacattgataaatcacaacaagaagagaaa |
41781834 |
T |
|
| Q |
116 |
catagaaaaggcaacataaaattccagtttcaaaaacatcacaatcgaatctagaggatatatgtacaaacaataaattccaatcaaatggtactagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41781833 |
catagaaaaggcaacataaaattccagtttcaaaaacatcacaatcgaatctagaggatatatgtacaaacaataaattccaatcaaatggtactagt |
41781736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University