View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_high_4 (Length: 396)
Name: NF17261_high_4
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 40746311 - 40745943
Alignment:
| Q |
12 |
aatactgatacttggcctaatggaaaaaagtttaaagctggtgatgtgctcagtaagtttaaatttaatttgtcatatatatactgatcaggggcggacc |
111 |
Q |
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| T |
40746311 |
aatactgatacttggcctaatggaaaaaagtttaaagctggtgatgtgctcagtaagtttaaatttaatttgtcatacatatactgatcaggggcggacc |
40746212 |
T |
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| Q |
112 |
tggacttccaatatcagtggggctatattttttgtcaaatgattaagttgtaactttaattatatatatgcatatggtaattgattgttgcaggcttcaa |
211 |
Q |
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| T |
40746211 |
tggacttccaatatcagtggggctatattttttgtcaaatgattaagttgtaactttaattatatatatgcatatggtaattgattgttgcaggcttcaa |
40746112 |
T |
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| Q |
212 |
ctatgattcaaccacacacaatgtggttgccgtggacaaaagtggatacaacaactgtaagacaccgggaggtgctaaagtgttcagttcagggagtgac |
311 |
Q |
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| T |
40746111 |
ctatgattcaaccacacacaatgtggttgccgtggacaaaagtggatacaacaactgtaagacaccgggaggtgctaaagtgttcagttcagggagtgac |
40746012 |
T |
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| Q |
312 |
caaatcaggctatcaagaggacaaaactacttcatatgcagctatcctggtcactgccagtctgggatg |
380 |
Q |
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| T |
40746011 |
caaattaggctatcaagaggacaaaactacttcatatgcagctatcctggtcactgccaatctgggatg |
40745943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 40738899 - 40738747
Alignment:
| Q |
228 |
cacaatgtggttgccgtggacaaaagtggatacaacaactgtaagacaccgggaggtgctaaagtgttcagttcagggagtgaccaaatcaggctatcaa |
327 |
Q |
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| T |
40738899 |
cacaatgtggttttggtggaccaaactggatacgacaaatgcaagacaccagaaggttctaaagtgttcagaacagggagtgaccaaatcgagctagtaa |
40738800 |
T |
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| Q |
328 |
gaggacaaaactacttcatatgcagctatcctggtcactgccagtctgggatg |
380 |
Q |
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| T |
40738799 |
agggagacaactacttcatatgcaaccttccaggtcactgccaatctgggatg |
40738747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 44942737 - 44942692
Alignment:
| Q |
99 |
tcaggggcggacctggacttccaatatcagtggggctatatttttt |
144 |
Q |
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| T |
44942737 |
tcaggggcggacctggacttccaatatcagtggggcaatatttttt |
44942692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 48901503 - 48901450
Alignment:
| Q |
105 |
gcggacctggacttccaatatcagtggggctatatttttt-gtcaaatgattaa |
157 |
Q |
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| T |
48901503 |
gcggacctggacttccagtatcagtggggcaatattttttcgtcaaatgattaa |
48901450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 11380192 - 11380138
Alignment:
| Q |
103 |
gggcggacctggacttccaatatcagtggggctatattttttgtcaaatgattaa |
157 |
Q |
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| T |
11380192 |
gggcggacttggacttccaataccagtggggcaatattttttgtcatatgattaa |
11380138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 25740146 - 25740174
Alignment:
| Q |
100 |
caggggcggacctggacttccaatatcag |
128 |
Q |
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| T |
25740146 |
caggggcggacctggacttccaatatcag |
25740174 |
T |
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