View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17261_high_5 (Length: 391)

Name: NF17261_high_5
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17261_high_5
NF17261_high_5
[»] chr4 (16 HSPs)
chr4 (151-377)||(7004261-7004487)
chr4 (151-259)||(7039623-7039731)
chr4 (155-259)||(7020304-7020408)
chr4 (151-259)||(7027217-7027325)
chr4 (151-259)||(7047005-7047113)
chr4 (151-259)||(7052989-7053097)
chr4 (151-259)||(7013928-7014036)
chr4 (151-259)||(6994500-6994608)
chr4 (19-98)||(7014140-7014219)
chr4 (19-84)||(7047286-7047351)
chr4 (19-97)||(7027562-7027640)
chr4 (311-377)||(7046873-7046939)
chr4 (311-377)||(7027085-7027151)
chr4 (23-97)||(7056111-7056185)
chr4 (19-68)||(7004523-7004572)
chr4 (19-71)||(7039855-7039907)
[»] chr2 (1 HSPs)
chr2 (154-191)||(5859195-5859232)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 151 - 377
Target Start/End: Complemental strand, 7004487 - 7004261
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004487 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 7004388  T
Q  251 ctgaaaatgcatataacaggatctatagttaacaatggtggatttcagaattccatcctgagattaattttccgtcggtagtagaagcaacaaatagata 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7004387 ctgaaaatgcatataacaggatctatagttaacaatggtggatttcagaattccctcctgagattaattttccgtcggtagtagaagcaacaaatagata 7004288  T
Q  351 ttatggttggaaacctggagatttatc 377  Q
    |||||||||||||||||||||||||||    
T  7004287 ttatggttggaaacctggagatttatc 7004261  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 7039731 - 7039623
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  7039731 ccgcatagagttcatccgagatgagtcccattccatgagcatatgggatttgataattatcttctttgtatgttgttatggggttccctagcagatatcc 7039632  T
Q  251 ctgaaaatg 259  Q
    |||||||||    
T  7039631 ctgaaaatg 7039623  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 7020408 - 7020304
Alignment:
Q  155 atagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatccctga 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||| |||||| | |||||||||||||||||||||||||    
T  7020408 atagagttcatcagagatgagtcccattccatgagcatattggattcgataattatattctttgtgtgttgtaaaggggttccctagcagatatccctga 7020309  T
Q  255 aaatg 259  Q
    |||||    
T  7020308 aaatg 7020304  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 7027325 - 7027217
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||   |||||||||||||||||||||    
T  7027325 ccgcataaagttcatcagagatgagtcccattccatgagcatactggatttgataattatcttctttgtgtgttgtataggggttccctagcagatatcc 7027226  T
Q  251 ctgaaaatg 259  Q
    |||||||||    
T  7027225 ctgaaaatg 7027217  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 7047113 - 7047005
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||   |||||||||||||||||||||    
T  7047113 ccgcataaagttcatcagagatgagtcccattccatgagcatactggatttgatagttatcttctttgtatgttgtccaggggttccctagcagatatcc 7047014  T
Q  251 ctgaaaatg 259  Q
    |||||||||    
T  7047013 ctgaaaatg 7047005  T

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Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 7053097 - 7052989
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||| ||| | |||||||||||||||||||||    
T  7053097 ccgcatacagttcatcagagatgagtcccattccatgagcatattgaattcgataattatcttctctatatgatgttaaggggttccctagcagatatcc 7052998  T
Q  251 ctgaaaatg 259  Q
    |||||||||    
T  7052997 ctgaaaatg 7052989  T

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Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 7014036 - 7013928
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||||||||||    
T  7014036 ccgcatagagttcatcagaaatgagccccattccatgagcatatgggatttgataattttgttctttgaatgttgttaaggggttccctagcagatatcc 7013937  T
Q  251 ctgaaaatg 259  Q
    ||| |||||    
T  7013936 ctggaaatg 7013928  T

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Target: chr4; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 6994608 - 6994500
Alignment:
Q  151 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 250  Q
    ||||||| ||||||||||| ||||||||||||||||||| | || |||||||||| |||| |||||||| |||||| || ||||||||||||||||||||    
T  6994608 ccgcataaagttcatcagaaatgagtcccattccatgagtaaatgggatttgatagtttttttctctgtgtgttgttatagggttccctagcagatatcc 6994509  T
Q  251 ctgaaaatg 259  Q
    |||||||||    
T  6994508 ctgaaaatg 6994500  T

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Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7014219 - 7014140
Alignment:
Q  19 agaccattaagcataataacatcactctttaaattcaagttcaaacacatcatcattgtaatcaacaggaaaatacaatg 98  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7014219 agaccattaagcataataacatcaaaatttaaattcaagttcaaacacatcatcattgtaatcaacaggaaaatacaatg 7014140  T

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Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 7047351 - 7047286
Alignment:
Q  19 agaccattaagcataataacatcactctttaaattcaagttcaaacacatcatcattgtaatcaac 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7047351 agaccattaagcataataacatcactctttaaattcaagttcaaacacatcattattgtaatcaac 7047286  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 7027640 - 7027562
Alignment:
Q  19 agaccattaagcataataacatcactctttaaattcaagttcaaacacatcatcattgtaatcaacaggaaaatacaat 97  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  7027640 agaccattaagcataataacatcatccattaaattcaagtacaaacatatcatcattgtaatcaacaagaaaatacaat 7027562  T

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Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 7046939 - 7046873
Alignment:
Q  311 agattaattttccgtcggtagtagaagcaacaaatagatattatggttggaaacctggagatttatc 377  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  7046939 agattaatttttcgtcggtagtagaagcaacaaatagagattatgattggaaacctggagatttatc 7046873  T

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Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 7027151 - 7027085
Alignment:
Q  311 agattaattttccgtcggtagtagaagcaacaaatagatattatggttggaaacctggagatttatc 377  Q
    |||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7027151 agattaattttttatcggtagtagaagcaacaaatagagattatggttggaaacctggagatttatc 7027085  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 7056185 - 7056111
Alignment:
Q  23 cattaagcataataacatcactctttaaattcaagttcaaacacatcatcattgtaatcaacaggaaaatacaat 97  Q
    |||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  7056185 cattaagcataatagcatcattcattaaattcaagtagaaacacatcatcattgtaatcaacaagaaaatacaat 7056111  T

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Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 7004572 - 7004523
Alignment:
Q  19 agaccattaagcataataacatcactctttaaattcaagttcaaacacat 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004572 agaccattaagcataataacatcactctttaaattcaagttcaaacacat 7004523  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7039907 - 7039855
Alignment:
Q  19 agaccattaagcataataacatcactctttaaattcaagttcaaacacatcat 71  Q
    |||| |||||||||||||||||||  | |||||||||||| |||| |||||||    
T  7039907 agacgattaagcataataacatcatccattaaattcaagtacaaaaacatcat 7039855  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 5859232 - 5859195
Alignment:
Q  154 catagagttcatcagagatgagtcccattccatgagca 191  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  5859232 catatagttcatcagatatgagtcccattccatgagca 5859195  T

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