View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_high_7 (Length: 337)
Name: NF17261_high_7
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_high_7 |
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| [»] scaffold0685 (1 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 24892235 - 24892448
Alignment:
| Q |
108 |
atgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaagttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24892235 |
atgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaagttgttaggaactcagggaagagagaaatgggaaattgatagaaacaatcaaag |
24892334 |
T |
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| Q |
208 |
gaaatgaacagtttgattgaaaatactctgaaagggagagagaactctccaccaagggtttcccccaacatcaaagcccttgcacagttcacacatccaa |
307 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
24892335 |
gaaatgaacagtttaattgaaaatactctgaatgcgagagagaactctccaccaagggtttcacccaacatcaaagcctttgcacagttcacacatccaa |
24892434 |
T |
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| Q |
308 |
attactgaatgctt |
321 |
Q |
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||||| |||||||| |
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| T |
24892435 |
attaccgaatgctt |
24892448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 285
Target Start/End: Original strand, 24919242 - 24919467
Alignment:
| Q |
55 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
154 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| ||||| ||| || |||||||||| |
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| T |
24919242 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcgaacaccacaaaaacacaag |
24919336 |
T |
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| Q |
155 |
ttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaactc |
254 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||| |
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| T |
24919337 |
ttgttaggaactcaaggaagaaagaaatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatgctcagaatgggagaaagaactc |
24919436 |
T |
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| Q |
255 |
tccaccaagggtttcccccaacatcaaagcc |
285 |
Q |
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| T |
24919437 |
tccaccaaggattcccccctacatcagagcc |
24919467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 55 - 285
Target Start/End: Original strand, 24995110 - 24995334
Alignment:
| Q |
55 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
154 |
Q |
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| T |
24995110 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcaaatgccgcaaaaacacagg |
24995204 |
T |
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| Q |
155 |
ttgtt-aggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaact |
253 |
Q |
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||||| |||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
24995205 |
ttgtttaggaacccagggaggaga--aatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactcagaatgggagaaagaact |
24995302 |
T |
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| Q |
254 |
ctccaccaagggtttcccccaacatcaaagcc |
285 |
Q |
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||||||||||| || ||||| |||||| |||| |
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| T |
24995303 |
ctccaccaaggattcccccctacatcagagcc |
24995334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 24892162 - 24892207
Alignment:
| Q |
14 |
gaaataaaactgtatccattagaatttctgacatcaagacctttaa |
59 |
Q |
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| T |
24892162 |
gaaataaaactgtatccattagaatttctgacatcaagacctttaa |
24892207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 3849 - 4062
Alignment:
| Q |
55 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
154 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| ||||| ||| || |||||||||| |
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| T |
3849 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcgaacaccacaaaaacacaag |
3943 |
T |
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| Q |
155 |
ttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaactc |
254 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||| |
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| T |
3944 |
ttgttaggaactcaaggaagaaagaaatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatgctcagaatgggagaaagaactc |
4043 |
T |
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| Q |
255 |
tccaccaagggtttccccc |
273 |
Q |
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| T |
4044 |
tccaccaaggattcccccc |
4062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 31934 - 32033
Alignment:
| Q |
179 |
aaatgggaaattgata-gaaacaatcaaa-ggaaatgaacag-tttgattg-aaaatactctgaaagggagagagaactctcc-accaagggtttccccc |
273 |
Q |
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||||| |||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| ||| |||||| |||||||||| ||||||| || ||||| |
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| T |
31934 |
aaatgtgaaattgataagaaacaatcaaaaggaaatgaacagttttgattgaaaaatactcagaatgggagaaagaactctcctaccaaggattcccccc |
32033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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