View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17261_high_8 (Length: 336)
Name: NF17261_high_8
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_high_8 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0536 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 5858 - 5551
Alignment:
| Q |
19 |
ggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcaaggtcggtggcggcggagaggctttcgacgccatcagggaggccaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5858 |
ggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttcgacgccatcagggaggccaac |
5759 |
T |
|
| Q |
119 |
ttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5758 |
ttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggta |
5659 |
T |
|
| Q |
219 |
actttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaagtagatagtaagtggtttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5658 |
actttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaagtagatagtaagtgctttct |
5559 |
T |
|
| Q |
319 |
ctgctcct |
326 |
Q |
| |
|
|| ||||| |
|
|
| T |
5558 |
cttctcct |
5551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 9842 - 9557
Alignment:
| Q |
19 |
ggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcaaggtcggtggcggcggagaggctttcgacgccatcagggaggccaac |
118 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||| | || | | ||| |||||||| ||||| ||||| || || || |||||||| || |
|
|
| T |
9842 |
ggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttctacaccgtcggggaggcctac |
9743 |
T |
|
| Q |
119 |
ttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggta |
218 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
9742 |
ttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttggaaggtgtggttatgatggta |
9643 |
T |
|
| Q |
219 |
actttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaagtagatagtaagtggtttct |
318 |
Q |
| |
|
|| ||||||| ||||| |||||| |||| |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
9642 |
acattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaagtagattttaagtgctttct |
9559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 72 - 326
Target Start/End: Complemental strand, 48911639 - 48911385
Alignment:
| Q |
72 |
aggtcggtggcggcggagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaaggga |
171 |
Q |
| |
|
|||||||||| || | ||||| |||||||||||| |||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
48911639 |
aggtcggtggtggtgaagaggggttcgacgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaa |
48911540 |
T |
|
| Q |
172 |
tggatttgccaaggatttgagcattggagggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcat |
271 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
48911539 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
48911440 |
T |
|
| Q |
272 |
atgaccaggagctaagtaaggtatgaagtagatagtaagtggtttctctgctcct |
326 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
48911439 |
gtggccaggtgctaagtaaggtatgaagtagatggtaagtgctttctcttctcct |
48911385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 48975033 - 48975190
Alignment:
| Q |
123 |
tgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggtaactt |
222 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| | || |||||||||||||| || |||||| ||||| ||||| ||||| ||||||||||| | |
|
|
| T |
48975033 |
tgggaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacat |
48975132 |
T |
|
| Q |
223 |
tttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccagg |
280 |
Q |
| |
|
|||| || | ||||||||||||| || ||||| |||| |||| |||| || ||||| |
|
|
| T |
48975133 |
ggtgaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccagg |
48975190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 48952137 - 48952197
Alignment:
| Q |
87 |
gagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaa |
147 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||||| |||||||| ||| ||| ||| |||| |
|
|
| T |
48952137 |
gagaggttttcgatgccatcggggaggccaacttcttgggaagggaattgaaaggtttgaa |
48952197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University