View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_10 (Length: 325)
Name: NF17261_low_10
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_10 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 130518 - 130821
Alignment:
| Q |
18 |
ttttcgatgttgtaagtttctggtctatgttgtaactttggagtactttattctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataa |
117 |
Q |
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||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| |||| |||||| |
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| T |
130518 |
ttttcaatgttgtaagtttctggtctatgttgtccctttggtgtagtttattctattgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataa |
130617 |
T |
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| Q |
118 |
taaaataattattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaacaagttaat |
217 |
Q |
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| T |
130618 |
taaaatcattattcattttcaatatttatctcatatcatacttaggatttcaacaaggaatgatggggatttcataagatttcttgcaaaacaagttaat |
130717 |
T |
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| Q |
218 |
aactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130718 |
aactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgag |
130817 |
T |
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| Q |
318 |
gcag |
321 |
Q |
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|||| |
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| T |
130818 |
gcag |
130821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 81993 - 82098
Alignment:
| Q |
205 |
aaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcg |
304 |
Q |
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| T |
81993 |
aaaacaagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacg |
82092 |
T |
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| Q |
305 |
aaattc |
310 |
Q |
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|||||| |
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| T |
82093 |
aaattc |
82098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 13601861 - 13602164
Alignment:
| Q |
18 |
ttttcgatgttgtaagtttctggtctatgttgtaactttggagtactttattctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataa |
117 |
Q |
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||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| |||| |||||| |
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| T |
13601861 |
ttttcaatgttgtaagtttctggtctatgttgtccctttggtgtagtttattctattgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataa |
13601960 |
T |
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| Q |
118 |
taaaataattattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaacaagttaat |
217 |
Q |
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| T |
13601961 |
taaaatcattattcattttcaatatttatctcatatcatacttaggatttcaacaaggaatgatggggatttcataagatttcttgcaaaacaagttaat |
13602060 |
T |
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| Q |
218 |
aactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgag |
317 |
Q |
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| T |
13602061 |
aactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgag |
13602160 |
T |
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| Q |
318 |
gcag |
321 |
Q |
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|||| |
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| T |
13602161 |
gcag |
13602164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 19153442 - 19153164
Alignment:
| Q |
24 |
atgttgtaagtttctggtctatgttgtaactttgga--gtactttattctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaa |
121 |
Q |
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|||||||||||||||||||| |||| ||| || ||| ||| |||||||||| ||||| ||||||||| |||||||||||||| || ||| |||||| |
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| T |
19153442 |
atgttgtaagtttctggtctttgttttaatttaggatagtagtttattctatggaactccacaatgtaaccatttgtacttgtcaaaatgcaagaataaa |
19153343 |
T |
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| Q |
122 |
ataat------------tattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaac |
209 |
Q |
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| T |
19153342 |
ataatattaacaatttttattcattgccaatatttatctccta-----cataggatttcaacaaggaattgtggggatttcacaatatttctttcaaaag |
19153248 |
T |
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| Q |
210 |
aagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtgg |
293 |
Q |
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| T |
19153247 |
aagttaataagcgttttatattggattttaagtaaacttggcgcttatcaggtggttgccagaaattgattgaaagagcggtgg |
19153164 |
T |
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