View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_13 (Length: 282)
Name: NF17261_low_13
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9516367 - 9516136
Alignment:
| Q |
1 |
tatgttgagaaatgagcacatttatttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtgaaaaatagaataaa |
100 |
Q |
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| T |
9516367 |
tatgttgagaaatgagcacatttagttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtgaaaaatagaataaa |
9516268 |
T |
|
| Q |
101 |
aaatttaaagaataattgtagaaaccattaagagaacatgtaaaacgttttaaagaagatcaagattctttatcctaaaatattgtgatatgcatgtgag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9516267 |
aaatttaaagaataattgtagaaacctttaagagaacatgtaaaacgttttatcgaagatcaagattctttatcctaaaatattgtgatatgcatgtgag |
9516168 |
T |
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| Q |
201 |
atggtaatctagatattatgacaaatgaaatt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9516167 |
atggtaatctagatattatgacaaatgaaatt |
9516136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40819221 - 40819332
Alignment:
| Q |
1 |
tatgttgagaaatgagcacatttatttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtgaaaaatagaataaa |
100 |
Q |
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|||||| ||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40819221 |
tatgttaagaaaggagcatatttagtttagtgctagacaatttctcgaagagttggattacatgtgtgtgttcagggaaagacgtgaaaaatagaataaa |
40819320 |
T |
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| Q |
101 |
aaatttaaagaa |
112 |
Q |
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| T |
40819321 |
aaatttaaagaa |
40819332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 40819324 - 40819407
Alignment:
| Q |
149 |
tttaaagaagatcaagattctttatcctaaaatattgtgatatgcatgtgagatggtaatctagatattatgacaaatgaaatt |
232 |
Q |
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| T |
40819324 |
tttaaagaagatcaagattcttaatcctaaaatcttgtgatatgcatgtgagatggtaatctagattttatgataaatgaaatt |
40819407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 5121213 - 5121270
Alignment:
| Q |
48 |
aagagttggattacatgtgtgtgttaagggaaagacgtgaaaaatagaataaaaaatt |
105 |
Q |
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||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||||| |
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| T |
5121213 |
aagagtttgattacatgtgtgggttaagtgaaagatgtgaaaaatagaataaaaaatt |
5121270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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