View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_17 (Length: 238)
Name: NF17261_low_17
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4570433 - 4570213
Alignment:
| Q |
18 |
aatccattacacgaagcaactagaaaagagcctctttgagaccctttgttgataagatgatgataattaggattgtcaacaactgttaaggaaggatttt |
117 |
Q |
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| T |
4570433 |
aatccattacacgaagcaactagaaaagagcctctttgagaccctttgttgataagatgatgataattaggattgtcaacaactgtgaaggaaggatttt |
4570334 |
T |
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| Q |
118 |
cgaatatttgagtgatagggtatctaactaaactatattcctcctcagattcatcatcgtcatttcctgggatttgacatttttgtataactttttcatt |
217 |
Q |
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| T |
4570333 |
cgaatatttgagtgatagggtatctaactaaactatattcctcctcagattcatcatcgtcatttcctgggatttgacatttttgtataactttttcatt |
4570234 |
T |
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| Q |
218 |
attcatattagcctaaaaact |
238 |
Q |
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| T |
4570233 |
attcatattagcctaaaaact |
4570213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 10218404 - 10218338
Alignment:
| Q |
95 |
aacaactgttaaggaaggattttcgaatatttgagtgatagggtatctaactaaactatattcctcc |
161 |
Q |
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| T |
10218404 |
aacaagtgtgaaggaagggttttcgaatatacgattgatagggtatctaactaagctgtaatcctcc |
10218338 |
T |
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