View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_20 (Length: 224)
Name: NF17261_low_20
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 22418331 - 22418144
Alignment:
| Q |
19 |
gtgatggtctacaagaagagttgaggaaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgat |
118 |
Q |
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| T |
22418331 |
gtgatggcctacaagaagagttgaggaaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgat |
22418232 |
T |
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| Q |
119 |
gcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttctccaatcctgttctaatttgaagacctagtaatgtt |
206 |
Q |
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| T |
22418231 |
gcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtt |
22418144 |
T |
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Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 12813465 - 12813304
Alignment:
| Q |
45 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
144 |
Q |
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| T |
12813465 |
aaacagtgatagagatgatttatgggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
12813366 |
T |
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| Q |
145 |
tgtatcttttgaagctattcattttctccaatcctgttctaatttgaagacctagtaatgtt |
206 |
Q |
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| T |
12813365 |
tgtatcttttgaagctattcattttcttcaattcttctctaatttgaagacctagtaatgtt |
12813304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 14998443 - 14998348
Alignment:
| Q |
45 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaa |
140 |
Q |
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| T |
14998443 |
aaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaagaa |
14998348 |
T |
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