View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_3 (Length: 505)
Name: NF17261_low_3
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 42297867 - 42298330
Alignment:
| Q |
17 |
acattgttaccgtgcatctatttcttgtaaatttatacatttcttgaaannnnnnnnnnnatcatatcattattttaagacattatccactaacgaatag |
116 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42297867 |
acattgttaccgtgtatct--ttcttgtaaatttatacattttttgaaaaaatttgtt--atcatatcattattttaagacattatccactaacgaatag |
42297962 |
T |
|
| Q |
117 |
aaaatgattatattaagttgctctcgaaattggttcattcaacccaacctaacccaatttcatcttatggttatcttaacatcatcgtatttgacctact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42297963 |
aaaatgattatattaagttgctctcgaaattggttcattcaacc----------caatttcatcttatggttatcttaacatcctcgtatttgacctact |
42298052 |
T |
|
| Q |
217 |
atagtttcatcatgcgtgcttgcgccgtcaaacagagaagaatgacataccttgatgaagcacaaatattcggtcgacaaaaacttaaagaaggtttcat |
316 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42298053 |
atagtttcatcgtgcgtgtttgcgccgtcaaacagagaagaatgacataccttgatgaagcacaaatattcggtcgacaaaaacttaaagaaggtttcat |
42298152 |
T |
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| Q |
317 |
taaatttggccaaatctttgctctaccattgtgaaaaagtcaatgttgtcttttctcatttatcccttcatgttttgctcaccattatccatgttcgctc |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42298153 |
taaatttggccaaatctttgctctaccattatgaaaaagtcaatgttgtcttttctcatttattccttcatgttttgctcaccattatccatgttcgctc |
42298252 |
T |
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| Q |
417 |
taagggtcccagacatcaggagccactgcagctccttcgatatgaattaattgaagtcattaactctttcatgtctct |
494 |
Q |
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||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42298253 |
taagggtcccagacatcaggagctaatgcagctcctccgatatgaattaattgaagtcattaactctttcatgtctct |
42298330 |
T |
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