View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17261_low_6 (Length: 363)
Name: NF17261_low_6
Description: NF17261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17261_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 17401340 - 17401687
Alignment:
| Q |
7 |
gtgagatgaaccccatcttagtgaggatagcttctaaataagaccaactaacactgtcaaaagatttagagatgccgagctttagagaaatatcacttat |
106 |
Q |
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| T |
17401340 |
gtgagaagaaccccatcttagtgaggatagcttctaaataagaccaactaacactgtcaaaagatttagagatgccgagctttagagaaatatcacttat |
17401439 |
T |
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| Q |
107 |
tttccccttgtgcgtgaaacacatatgatggagaattttgaaagtcgttaaagcattatcggtgatggaccgagaatggacaaacgctgcctgcttcgga |
206 |
Q |
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| T |
17401440 |
tttccccttgtgcgtgcaacacatatgatggagaattttgaaagtcgttaaagcattatcggtgatggaccgagaatggacaaacgctgcctgcttcgga |
17401539 |
T |
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| Q |
207 |
gatatccacttattcataagaggacgaaggcggttggcaaggtactttgcaatgattttgtagaggacattgcataag----gatataggacgaaggtct |
302 |
Q |
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| T |
17401540 |
gatatccacttattcataagaggacgaaggcggttggcaaggtactttgcaatgattttgtagaggacattgcataaggatcgatataggacgaaggtct |
17401639 |
T |
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| Q |
303 |
ttcatggtttctagattgtcctttttaggtgacaaaacaatgttagtg |
350 |
Q |
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| T |
17401640 |
ttcatggtttctggattgtcctttttaggtgacaaaacaatgttagtg |
17401687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 25897053 - 25897010
Alignment:
| Q |
261 |
attttgtagaggacattgcataaggatataggacgaaggtcttt |
304 |
Q |
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| T |
25897053 |
attttgtagaggacattgcataaagagatagggcgaaggtcttt |
25897010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 44137388 - 44137338
Alignment:
| Q |
263 |
tttgtagaggacattgcataaggatataggacgaaggtctttcatggtttc |
313 |
Q |
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| T |
44137388 |
tttgtagagcacattgcataaggatataggacggaggtccttcatagtttc |
44137338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 43896100 - 43896048
Alignment:
| Q |
255 |
gcaatgattttgtagaggacattgcataaggatataggacgaaggtctttcat |
307 |
Q |
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| T |
43896100 |
gcaatgattttgtaaaggacattacaaagggatatgggacgaagatctttcat |
43896048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 23148889 - 23148837
Alignment:
| Q |
255 |
gcaatgattttgtagaggacattgcataaggatataggacgaaggtctttcat |
307 |
Q |
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| T |
23148889 |
gcaatgattttgtaaaggacattacaaagggatatgggacgaagatctttcat |
23148837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 32497166 - 32497114
Alignment:
| Q |
255 |
gcaatgattttgtagaggacattgcataaggatataggacgaaggtctttcat |
307 |
Q |
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| T |
32497166 |
gcaatgattttgtaaaggacattacaaagggatatgggacgaagatctttcat |
32497114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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