View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17262_high_4 (Length: 253)
Name: NF17262_high_4
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17262_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 41448338 - 41448116
Alignment:
| Q |
14 |
gaacaagaatgagactaaacaaattgagactttcttttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaatgat |
113 |
Q |
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| T |
41448338 |
gaacaagaatgagactaaacaaattgagactttattttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaatgat |
41448239 |
T |
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| Q |
114 |
ttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggt |
213 |
Q |
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| T |
41448238 |
ttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgctagtgccaggt |
41448139 |
T |
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| Q |
214 |
ttggcagcagccaatgaattctc |
236 |
Q |
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| T |
41448138 |
ttggcagcagccaatgaattctc |
41448116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 41458646 - 41458490
Alignment:
| Q |
76 |
agaaactatttgcttcttaattatgatgagcaaatgatttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgat |
175 |
Q |
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| T |
41458646 |
agaaactatctgcttcttaattatcaaaagcaaatgatttaaacaagta----tattaaactaaccaaccactccctgtgacttcggaagctttcttgat |
41458551 |
T |
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| Q |
176 |
gaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatgaattctc |
236 |
Q |
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| T |
41458550 |
taaggcttttgatagcaataacaatgccaatgccaggtttggcagcagaaaatgaattctc |
41458490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 41441814 - 41441708
Alignment:
| Q |
130 |
attaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcagccaatg |
229 |
Q |
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| T |
41441814 |
attaaactcaccaaccactccctgtgaccctggaagctttcttgattaagtcttttaacagcaataactatgccagtacccggtttggcagcaaccaatg |
41441715 |
T |
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| Q |
230 |
aattctc |
236 |
Q |
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|||||| |
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| T |
41441714 |
tattctc |
41441708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 23828012 - 23827957
Alignment:
| Q |
168 |
atcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcag |
223 |
Q |
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| T |
23828012 |
atcttgatgaagtcttttgacagcaacagcaatgcctgtgccaggttttgcagcag |
23827957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 23824089 - 23824032
Alignment:
| Q |
166 |
ccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcag |
223 |
Q |
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| T |
23824089 |
ccatcttgattaagtcttttgacagcaacggcaatgcctgtgccaggtttggcagcag |
23824032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 23818854 - 23818762
Alignment:
| Q |
131 |
ttaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcag |
223 |
Q |
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||||||| |||||| |||| ||||||||| | |||||| || | ||||||||||| ||||| | |||||| ||||||||||||||||||| |
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| T |
23818854 |
ttaaactaaccaacaactcattgtgacctttgaggccatcctggttaagtcttttgacagcaacagtaatgcctgtgccaggtttggcagcag |
23818762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 23832038 - 23831946
Alignment:
| Q |
131 |
ttaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataacaatgccagtgccaggtttggcagcag |
223 |
Q |
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||||||| || ||| ||||| ||||||||| |||||||| |||| ||||||||||| |||| | ||||||| |||| ||||||||||||| |
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| T |
23832038 |
ttaaacttacaaacaactccttgtgacctttgaagccatcctgataaagtcttttgacagcagcagcaatgcctttgccgggtttggcagcag |
23831946 |
T |
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