View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17262_high_5 (Length: 250)
Name: NF17262_high_5
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17262_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 8041542 - 8041743
Alignment:
| Q |
46 |
tggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattc |
144 |
Q |
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| T |
8041542 |
tggcacacgataaaggaagctagtgttattatatgtttcaaataaatgaaagtcaacaaagcttataatctcaagtatatctaaagaccaatattaattc |
8041641 |
T |
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| Q |
145 |
gttgctattcgtgcactaccatgtcgcaccaacaagctttttcctttaatgaatcaatatttgttttactctactcaggggtccaggattggctatactt |
244 |
Q |
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| T |
8041642 |
gttgctattcatgcactaacatgttgcaccaacaagctttttcctttaatgaatcaatatttgttttattctactcaggggtccaggtttggctatactt |
8041741 |
T |
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| Q |
245 |
gt |
246 |
Q |
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|| |
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| T |
8041742 |
gt |
8041743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 7972002 - 7971941
Alignment:
| Q |
189 |
tttaatgaatcaatatttgttttactctactcaggggtccaggattggctatacttgttctt |
250 |
Q |
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| T |
7972002 |
tttaatgaatcaatatttgttttactctaatcaggggtccaggattggctatacttgttctt |
7971941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 23523199 - 23523052
Alignment:
| Q |
42 |
cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta |
140 |
Q |
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| T |
23523199 |
cgactagcacacgataaaggcagctagtgttattatatttttctaataaatgaaagtcaacaaagcttacaatctcaattatatccaaaggccaatatta |
23523100 |
T |
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| Q |
141 |
attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcc |
188 |
Q |
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| T |
23523099 |
attcgttgctattcgtgcactaccatgtcacaccaacaagctttttcc |
23523052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 45123670 - 45123544
Alignment:
| Q |
64 |
ctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattcgttgctattcgtgcactac |
163 |
Q |
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| T |
45123670 |
ctagtgttattacatttttctaataaatgaatgtcaacaaagcttacaatctcaagtatatccaaaggccaatattaattcgttgctatttgtgcactac |
45123571 |
T |
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| Q |
164 |
catgtcgcaccaacaagctttttcctt |
190 |
Q |
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| T |
45123570 |
catgtcgcaccaacaagctttttcctt |
45123544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 31384737 - 31384886
Alignment:
| Q |
42 |
cgactggcacaca-taaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta |
140 |
Q |
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|||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||| | || |||| |
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| T |
31384737 |
cgactggcacacggtaaaggcagctagtgttgttatatttttcaaataaatgaaagtcaacgcaacttacaatctcaagcatatccaaaagctaacatta |
31384836 |
T |
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| Q |
141 |
attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcctt |
190 |
Q |
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| T |
31384837 |
attcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcctt |
31384886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 26558535 - 26558385
Alignment:
| Q |
42 |
cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta |
140 |
Q |
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|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||| |||| | |||||| |
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| T |
26558535 |
cgactggcacacgatgcaggtagctagtgttattatatttttcaaataaatgaaagtcaacacaatttacaatctcaagcatatctaaaggctgatatta |
26558436 |
T |
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| Q |
141 |
attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttccttt |
191 |
Q |
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| T |
26558435 |
tttcgttggttttcgtgcactaacatgtcgcaccaacaaactttttccttt |
26558385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 48961346 - 48961307
Alignment:
| Q |
63 |
gctagtgttattatatttttcaaataaatgaaagtcaaca |
102 |
Q |
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| T |
48961346 |
gctagtgttattatatttttcaaataaatgaaagtcaaca |
48961307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 48960204 - 48960123
Alignment:
| Q |
106 |
cttataatctcaagtatatccaaagaccaatattaattcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcc |
188 |
Q |
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| T |
48960204 |
cttacaatctcaaacatatccaaatactaatattt-ttcgtaggttttcgtgcactaacatgccgcaccaacaagctttttcc |
48960123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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