View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17262_low_1 (Length: 708)
Name: NF17262_low_1
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17262_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 200 - 693
Target Start/End: Complemental strand, 52518952 - 52518463
Alignment:
| Q |
200 |
ctaagggctgaatatattaagttttgaatggcatcaatatcttgttttagtaagagtccattgcccatgaaagagacagctttgagccatggtgaatatc |
299 |
Q |
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| T |
52518952 |
ctaagggctgaatatattaagttgtgaatggcatcaacatcttgttttagtaagagtccattacccatgaaagagacagctttgagccatggtgaatatc |
52518853 |
T |
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| Q |
300 |
ctccacctatggcaacttatgaggaggttgtagacaatcccaagctcttcatactttgcttggagaagctccacactctaatgggcaccaagttcatgta |
399 |
Q |
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| T |
52518852 |
ctccacctatggcaacttatgaggaggttgtagacaatcccaagctcttcatactttgcttggagaagctccacactctaatgggcaccaagttcatgta |
52518753 |
T |
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| Q |
400 |
agctccctggctttataaactacaaactagagattgtgacttggtttacttttatattaagatgtggaaaatactagcatatcatgtcaaattccttgca |
499 |
Q |
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| T |
52518752 |
agctccctggatttataaactacgaactagagattgtgacttggtttacttttatattaagatgtggaaaatactagcatatcatgtcaaattccttgca |
52518653 |
T |
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| Q |
500 |
tcatagtgttttgttctctctatatattttgataagcgatgcatcatgcacttgttgctgctctacctaatcaaattagctttctttggctttgacattg |
599 |
Q |
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| T |
52518652 |
tcatagtgttttgttctctctatatattttgataagcgatgcatcatgcacttgttgctgctctacctaatcaaattagctttctttggctttgacattg |
52518553 |
T |
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| Q |
600 |
ggtttaagataatgattctatctataataatggctatgaaattgttacaatgtctgcaaagggtccatgtttgttatgttttctggatataaat |
693 |
Q |
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| T |
52518552 |
ggtttaagataatgatt----ctataataatggctatgaaattgttacaatgtctgcaaagggtccatgtttgttatgttttctggatataaat |
52518463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 52519140 - 52519100
Alignment:
| Q |
8 |
attattctcattaatgtttttgttttccctatctacaaata |
48 |
Q |
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| T |
52519140 |
attattctcattaatgtttttgttttccctatctacaaata |
52519100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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