View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17262_low_3 (Length: 508)

Name: NF17262_low_3
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17262_low_3
NF17262_low_3
[»] chr5 (9 HSPs)
chr5 (133-412)||(9142047-9142321)
chr5 (414-492)||(6240168-6240246)
chr5 (414-492)||(6234542-6234619)
chr5 (1-74)||(9142383-9142456)
chr5 (161-208)||(35262798-35262845)
chr5 (365-413)||(1970515-1970563)
chr5 (362-405)||(26712386-26712429)
chr5 (362-405)||(26982124-26982167)
chr5 (362-412)||(4555387-4555437)
[»] chr4 (16 HSPs)
chr4 (146-412)||(55514148-55514402)
chr4 (1-74)||(55513999-55514072)
chr4 (147-207)||(36013709-36013769)
chr4 (147-207)||(39870021-39870081)
chr4 (283-403)||(47326708-47326828)
chr4 (283-403)||(47341504-47341624)
chr4 (147-207)||(47326553-47326613)
chr4 (147-207)||(47341349-47341409)
chr4 (268-405)||(36013858-36013993)
chr4 (146-208)||(39112499-39112563)
chr4 (268-405)||(39870170-39870306)
chr4 (161-202)||(38010027-38010068)
chr4 (365-414)||(30808619-30808668)
chr4 (147-184)||(23574053-23574092)
chr4 (365-413)||(39429224-39429272)
chr4 (365-405)||(41261129-41261169)
[»] chr3 (4 HSPs)
chr3 (141-207)||(31598545-31598611)
chr3 (268-405)||(31598700-31598835)
chr3 (365-415)||(43768023-43768073)
chr3 (365-414)||(44406960-44407009)
[»] chr6 (2 HSPs)
chr6 (159-207)||(16765477-16765525)
chr6 (317-405)||(16764932-16765020)
[»] chr1 (6 HSPs)
chr1 (161-202)||(2687136-2687177)
chr1 (365-412)||(29334214-29334261)
chr1 (365-412)||(43316357-43316404)
chr1 (338-405)||(49420091-49420158)
chr1 (321-382)||(51610178-51610239)
chr1 (340-412)||(7463415-7463487)
[»] chr8 (3 HSPs)
chr8 (365-413)||(42345393-42345441)
chr8 (365-412)||(13935054-13935101)
chr8 (365-405)||(35840531-35840571)
[»] chr2 (3 HSPs)
chr2 (303-405)||(24383001-24383104)
chr2 (375-414)||(44094828-44094867)
chr2 (365-405)||(36390964-36391004)
[»] chr7 (2 HSPs)
chr7 (370-412)||(9122650-9122692)
chr7 (357-405)||(35771252-35771300)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 133 - 412
Target Start/End: Complemental strand, 9142321 - 9142047
Alignment:
Q  133 aaattagttgttgataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgtt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||  |||||||||||||||||||    
T  9142321 aaattagttgttgataaataaataaataattagtttgaataagtctttttt--gaaacaattgggagaggaaaaaaatt--agtatgaatttgtgttgtt 9142226  T
Q  233 ctgagcagtaaagaaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatca 332  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  9142225 ctgagcagtaaagaaaatgatggac-tgggttaatttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgggtagtctatgattaaatca 9142127  T
Q  333 gtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  9142126 gtgttccaagttaatcaagtggtataaaatagctttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 6240168 - 6240246
Alignment:
Q  414 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgtatcaagtaaatatgtacaaatatt 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6240168 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgtgtcaagtaaatatgtacaaatatt 6240246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 6234542 - 6234619
Alignment:
Q  414 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgtatcaagtaaatatgtacaaatatt 492  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  6234542 ttagaaatatgtacaaataaa-aggtacttgcattgtgcgtattgaagtagttgtgtcaaataaatatgtacaaatatt 6234619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9142456 - 9142383
Alignment:
Q  1 ttcggcaccatcacacatacaaaaactagatctcgttcgacttttctttcatcatcacatattcaaactactta 74  Q
    ||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||    
T  9142456 ttcggcatcatcacacatacaaaaattaaatctggttcgacttttctttcatcatcacatattcaaactactta 9142383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 35262798 - 35262845
Alignment:
Q  161 attagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 208  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||    
T  35262798 attagtttgaataagttttattttagaaacagttgggagagggaaaaa 35262845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 1970515 - 1970563
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 413  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||    
T  1970515 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacca 1970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 26712386 - 26712429
Alignment:
Q  362 tagctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  26712386 tagctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 26982124 - 26982167
Alignment:
Q  362 tagctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  26982124 tagctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 4555387 - 4555437
Alignment:
Q  362 tagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    |||||||||||| || ||||||||||| |||||| ||| ||||||||||||    
T  4555387 tagctttcccatggtaggaaacaacttccctttcccatactaaatgccacc 4555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 146 - 412
Target Start/End: Original strand, 55514148 - 55514402
Alignment:
Q  146 ataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgttctgagcagtaaag 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55514148 ataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgttctgagcagtaaag 55514247  T
Q  246 aaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctattta 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                
T  55514248 aaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagtagtctatgattaaatcag------------ 55514335  T
Q  346 atcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    || || | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  55514336 attaaatagtataaaatagctttcccatggtgggaaacaactttcctttcccatgctaaatggcacc 55514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55513999 - 55514072
Alignment:
Q  1 ttcggcaccatcacacatacaaaaactagatctcgttcgacttttctttcatcatcacatattcaaactactta 74  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  55513999 ttcggcatcatcacacatacaaaaactagatctggtttgacttttctttcatcatcacatattcaaattactta 55514072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 36013709 - 36013769
Alignment:
Q  147 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36013709 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 36013769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 39870021 - 39870081
Alignment:
Q  147 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39870021 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 39870081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 47326708 - 47326828
Alignment:
Q  283 ttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 382  Q
    |||||||||  ||||| |||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | ||||||||| ||||||||    
T  47326708 ttgaagacagtgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaa 47326807  T
Q  383 caactttcctttcacatgcta 403  Q
    ||||||||||||| |||||||    
T  47326808 caactttcctttcccatgcta 47326828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 47341504 - 47341624
Alignment:
Q  283 ttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 382  Q
    |||||||||  ||||| |||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | ||||||||| ||||||||    
T  47341504 ttgaagacagtgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaa 47341603  T
Q  383 caactttcctttcacatgcta 403  Q
    ||||||||||||| |||||||    
T  47341604 caactttcctttcccatgcta 47341624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 47326553 - 47326613
Alignment:
Q  147 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    ||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47326553 taaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagaggaaaaa 47326613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 47341349 - 47341409
Alignment:
Q  147 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    ||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47341349 taaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagaggaaaaa 47341409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 405
Target Start/End: Original strand, 36013858 - 36013993
Alignment:
Q  268 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 367  Q
    ||||||| |||||||||||||||   ||||| |||||||||| || |  |||||||||||||||||||||||  ||||||| |   ||  |||| | |||    
T  36013858 ttcaatctcatgaggttgaagact--gtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttccactttaatctaactgttcaaaaaaactt 36013955  T
Q  368 tcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||||| |||| ||||||||||| |||| |||||||||    
T  36013956 tcccatggtggtaaacaactttcatttcccatgctaaa 36013993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 39112563 - 39112499
Alignment:
Q  146 ataaataaataaataat--tagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 208  Q
    |||||| ||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||    
T  39112563 ataaatcaataaataatattagtttgaataagttttattttagaaacagttgggagaggaaaaaa 39112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 405
Target Start/End: Original strand, 39870170 - 39870306
Alignment:
Q  268 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 367  Q
    ||||||| ||||||||||||||||  ||||| |||||||||| || |  |||||| ||||||||||||||||| ||||||| |   || | ||| | |||    
T  39870170 ttcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtgtggtctattattaaatcagtgttcctctttaatctaactgt-tcaaaaaactt 39870268  T
Q  368 tcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
      |||| ||||||||||||||| ||||| |||||||||    
T  39870269 ctccatggtgggaaacaacttttctttcccatgctaaa 39870306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 38010027 - 38010068
Alignment:
Q  161 attagtttgaataagtcttattttagaaacaattgggagagg 202  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  38010027 attattttgaataagtcttattttagaaacagttgggagagg 38010068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 30808668 - 30808619
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccat 414  Q
    ||||||||| ||||||||||||| ||||||| |||  |||||||||||||    
T  30808668 ctttcccatggtgggaaacaactctcctttcccattttaaatgccaccat 30808619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 23574053 - 23574092
Alignment:
Q  147 taaataaataaataat--tagtttgaataagtcttatttt 184  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  23574053 taaataaataaataatattagtttgaataagtcttatttt 23574092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 39429272 - 39429224
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 413  Q
    ||||||||| || |||||||||| ||| ||| |||||||||||||||||    
T  39429272 ctttcccatggtaggaaacaactctccattcccatgctaaatgccacca 39429224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 41261169 - 41261129
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    ||||||||| |||| |||||||||||||||| |||||||||    
T  41261169 ctttcccatggtggaaaacaactttcctttcccatgctaaa 41261129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 31598545 - 31598611
Alignment:
Q  141 tgttgataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  31598545 tgttaataaataagtaagtaattattttgaataagtcttattttaggaacaattgggagaggaaaaa 31598611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 405
Target Start/End: Original strand, 31598700 - 31598835
Alignment:
Q  268 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 367  Q
    ||||||| ||||||||||||||||  |||||  ||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | |||    
T  31598700 ttcaatctcatgaggttgaagacagtgtaaa--agatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactt 31598797  T
Q  368 tcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||||| ||||||||||||||| ||||  |||||||||    
T  31598798 tcccatggtgggaaacaacttttcttttccatgctaaa 31598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 43768073 - 43768023
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccatt 415  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  43768073 ctttcccatggtgggaaacaactctccattcccatgctaaatgccaccatt 43768023  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 44406960 - 44407009
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccat 414  Q
    ||||||||| ||||||||||||| ||  ||| ||||||||||||||||||    
T  44406960 ctttcccatggtgggaaacaactatctattcccatgctaaatgccaccat 44407009  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 16765525 - 16765477
Alignment:
Q  159 taattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16765525 taattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 16765477  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 16765020 - 16764932
Alignment:
Q  317 gtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||||||||||||| ||||||||| ||||||| | | ||  |||| | ||| ||||| ||||||||||||||||||||| |||||||||    
T  16765020 gtctatgattaaataagtgttcctctttaatctaattgttcaaaaaaacttccccatggtgggaaacaactttcctttcccatgctaaa 16764932  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 2687177 - 2687136
Alignment:
Q  161 attagtttgaataagtcttattttagaaacaattgggagagg 202  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  2687177 attattttgaataagtcttattttagaaacagttgggagagg 2687136  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 29334261 - 29334214
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  29334261 ctttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 43316404 - 43316357
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  43316404 ctttcccatggtgggaaacaactatccattcccatgctaaatgccacc 43316357  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 49420158 - 49420091
Alignment:
Q  338 cctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    ||||||||||| | ||||  |||| |||||||||||  |||||||||||||||||||| ||| |||||    
T  49420158 cctatttaatctaatggtcaaaaaaagctttcccatcatgggaaacaactttcctttcccatactaaa 49420091  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 51610178 - 51610239
Alignment:
Q  321 atgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 382  Q
    ||||| |||||||| ||||| | ||||| |||||||||||| | ||||||||| ||||||||    
T  51610178 atgataaaatcagtattcctctctaatctagtggtataaaaaaactttcccatggtgggaaa 51610239  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 7463487 - 7463415
Alignment:
Q  340 tatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    ||||||||| | ||||  ||| |||||||||||| |||||||||   ||||||||  ||||||||||||||||    
T  7463487 tatttaatctaatggtcaaaattagctttcccatggtgggaaactcttttccttttccatgctaaatgccacc 7463415  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 42345441 - 42345393
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 413  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||    
T  42345441 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacca 42345393  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 13935054 - 13935101
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    |||||| || |||| |||||||||||||||| ||||||||||||||||    
T  13935054 ctttcctatggtggaaaacaactttcctttcccatgctaaatgccacc 13935101  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 35840531 - 35840571
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  35840531 ctttcccatcgtgggaaacaacttccctttcccatgctaaa 35840571  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 24383001 - 24383104
Alignment:
Q  303 atatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagt-gggaaacaactttcctttcacatgc 401  Q
    |||||||||  |||||||||||| ||||||||  |||| ||||||  | ||||| |||| | ||||||||| || |||||||||||| |||||| ||| |    
T  24383001 atatggtgtaggcagtctatgataaaatcagtactcctctttaatttaatggtacaaaaaaactttcccatggtggggaaacaacttccctttcccatac 24383100  T
Q  402 taaa 405  Q
    ||||    
T  24383101 taaa 24383104  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 44094828 - 44094867
Alignment:
Q  375 gtgggaaacaactttcctttcacatgctaaatgccaccat 414  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  44094828 gtgggaaacaactttcctttcccatgctaaatcccaccat 44094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 36391004 - 36390964
Alignment:
Q  365 ctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 9122692 - 9122650
Alignment:
Q  370 ccatagtgggaaacaactttcctttcacatgctaaatgccacc 412  Q
    |||| |||||||||||||| |||||| ||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttcccatgctaaatgccacc 9122650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 35771252 - 35771300
Alignment:
Q  357 taaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 405  Q
    |||| |||||||||||| ||||||||||||||| ||||| ||| |||||    
T  35771252 taaattagctttcccatggtgggaaacaactttgctttcccatactaaa 35771300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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