View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17262_low_5 (Length: 398)
Name: NF17262_low_5
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17262_low_5 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 124 - 380
Target Start/End: Complemental strand, 19456923 - 19456667
Alignment:
| Q |
124 |
aaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttactgcaggagctcaatttctgcgaaagctatttaactttaccat |
223 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19456923 |
aaacaaaatactctatagtttgatcaattaaactgaaagcagtttcactaacctttactgcaggagttcaatttctgcgaaagctatttaactttaccat |
19456824 |
T |
|
| Q |
224 |
caaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaa |
323 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
19456823 |
caaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaa |
19456724 |
T |
|
| Q |
324 |
cctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
||| |||||||||||||||||| || ||| ||| ||||||| |||||||||||||| |
|
|
| T |
19456723 |
cctactgcaaatccaactcccaagccgagaaacattgattctcttatagagtcatca |
19456667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 165 - 380
Target Start/End: Complemental strand, 19465939 - 19465723
Alignment:
| Q |
165 |
gtttcactaacctttactgc-aggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
263 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19465939 |
gtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaac |
19465840 |
T |
|
| Q |
264 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19465839 |
cgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgatt |
19465740 |
T |
|
| Q |
364 |
cttttatagagtcatca |
380 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
19465739 |
cttttatcgattcatca |
19465723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 165 - 376
Target Start/End: Complemental strand, 19394736 - 19394524
Alignment:
| Q |
165 |
gtttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
263 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
19394736 |
gtttcactaaccttaattggcaggacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacc |
19394637 |
T |
|
| Q |
264 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
363 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394636 |
cgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgatt |
19394537 |
T |
|
| Q |
364 |
cttttatagagtc |
376 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19394536 |
cttttatagagtc |
19394524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 119 - 380
Target Start/End: Complemental strand, 18017655 - 18017393
Alignment:
| Q |
119 |
gaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactt |
217 |
Q |
| |
|
||||||||| |||||||||||| | |||| || |||| |||||| |||||||| ||||| | |||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
18017655 |
gaataaaacaaaatactctatatcatgatcaattcaacttaaagtacgttcactaatctttattagcagaagctcaacttctacgaaagctatttaactt |
18017556 |
T |
|
| Q |
218 |
taccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccc |
317 |
Q |
| |
|
|||||||||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18017555 |
taccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccc |
18017456 |
T |
|
| Q |
318 |
cataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
18017455 |
cagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatca |
18017393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 18872310 - 18872500
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18872310 |
gcaggagctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctcc |
18872409 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttataga |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||| ||||||| |
|
|
| T |
18872410 |
atttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttataga |
18872500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 132 - 380
Target Start/End: Complemental strand, 19382514 - 19382264
Alignment:
| Q |
132 |
tactctatagtttcatcacttaaactgaaagtag-tttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagt |
229 |
Q |
| |
|
||||||||||||| || | | ||||| |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
19382514 |
tactctatagtttgattaataaaacttgaagtaggtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaat |
19382415 |
T |
|
| Q |
230 |
tacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgct |
329 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || |
|
|
| T |
19382414 |
aacatagagcttgtcacctactccatagataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctact |
19382315 |
T |
|
| Q |
330 |
gcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||| ||||||| |||||| |
|
|
| T |
19382314 |
ccaaatccaactcccatgcctagatacaacgactctattatagattcatca |
19382264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 183 - 383
Target Start/End: Complemental strand, 19352960 - 19352760
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
19352960 |
gcagaagctcatattctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctcc |
19352861 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
382 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19352860 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatcacc |
19352761 |
T |
|
| Q |
383 |
t |
383 |
Q |
| |
|
| |
|
|
| T |
19352760 |
t |
19352760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 17951446 - 17951194
Alignment:
| Q |
129 |
aaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaa |
227 |
Q |
| |
|
|||||||||||| | |||| || |||| ||||||| ||||||||||||| || |||| ||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
17951446 |
aaatactctatatcgtgatcaattcaacttaaagtaggttcactaaccttttctagcagaagctcaacttctgcaaaagctatttaactttaccttcaaa |
17951347 |
T |
|
| Q |
228 |
gttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctg |
327 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17951346 |
gttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaaccta |
17951247 |
T |
|
| Q |
328 |
ctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| |||||||| || || |||||||||||||||| ||| |||||| |
|
|
| T |
17951246 |
ctgcaaatcccactcccataccaaggtacaatgattcttttagagattcatca |
17951194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 203 - 380
Target Start/End: Original strand, 17725989 - 17726166
Alignment:
| Q |
203 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
302 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17725989 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
17726088 |
T |
|
| Q |
303 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17726089 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatca |
17726166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 203 - 380
Target Start/End: Original strand, 19027218 - 19027395
Alignment:
| Q |
203 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
302 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
19027218 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
19027317 |
T |
|
| Q |
303 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19027318 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatca |
19027395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 154 - 373
Target Start/End: Complemental strand, 19401324 - 19401104
Alignment:
| Q |
154 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
252 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
19401324 |
aacttaaattaggttcactaacctttactagcaaaagctcaacttctatgaaagctatttaactttaccatcaaagttacatagagcctgttacccactc |
19401225 |
T |
|
| Q |
253 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
352 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
19401224 |
catatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaag |
19401125 |
T |
|
| Q |
353 |
atacaatgattcttttataga |
373 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
19401124 |
gtacaacgattcttttataga |
19401104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 154 - 380
Target Start/End: Complemental strand, 18110028 - 18109801
Alignment:
| Q |
154 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
252 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| |||| ||||||| ||| || ||||||||| |||||||||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
18110028 |
aacttaaattaggttcactaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactc |
18109929 |
T |
|
| Q |
253 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
352 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
18109928 |
catatataaaacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaag |
18109829 |
T |
|
| Q |
353 |
atacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
18109828 |
gtacaatgattcttttatagattcatca |
18109801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 25464610 - 25464425
Alignment:
| Q |
194 |
atttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatg |
293 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25464610 |
atttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaata |
25464511 |
T |
|
| Q |
294 |
agaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatc |
379 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25464510 |
aaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatc |
25464425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 188 - 380
Target Start/End: Complemental strand, 17943517 - 17943325
Alignment:
| Q |
188 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||| || |||||||||||| |||||||||||||||| |
|
|
| T |
17943517 |
agctcagtttctgcgaaagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccatttt |
17943418 |
T |
|
| Q |
288 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |||| |||||||||||||||||||||| |
|
|
| T |
17943417 |
ctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatca |
17943325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 165 - 380
Target Start/End: Complemental strand, 18166743 - 18166527
Alignment:
| Q |
165 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
263 |
Q |
| |
|
|||||||||||||| || ||| || |||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| || |||||| |
|
|
| T |
18166743 |
gtttcactaaccttaaccagcatgaactcagtttctgagaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaac |
18166644 |
T |
|
| Q |
264 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
363 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
18166643 |
cgaaagtatgcatgtctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccatt |
18166544 |
T |
|
| Q |
364 |
cttttatagagtcatca |
380 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
18166543 |
ctcttatagagtcatca |
18166527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 183 - 370
Target Start/End: Complemental strand, 19377187 - 19377000
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
19377187 |
gcaggagcttaatttctttgaaacctgtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctcc |
19377088 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttat |
370 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19377087 |
atttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttat |
19377000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 183 - 376
Target Start/End: Complemental strand, 19335580 - 19335387
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||| |||||||| ||||||| ||||||||| |||| ||| | |||||||||||| |||||||||| |
|
|
| T |
19335580 |
gcaggagctcaatttcttttaaacatgttcaactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctcc |
19335481 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtc |
376 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
19335480 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtc |
19335387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 169 - 376
Target Start/End: Original strand, 14894807 - 14895015
Alignment:
| Q |
169 |
cactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaa |
267 |
Q |
| |
|
|||||||||| ||| || |||||||||||| | | |||| | ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14894807 |
cactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactccatcaataaaccgaa |
14894906 |
T |
|
| Q |
268 |
agtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttt |
367 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||| |||||||||||| |||||| || ||||||| ||||||| | |
|
|
| T |
14894907 |
agtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgccaagatacattgattctct |
14895006 |
T |
|
| Q |
368 |
tatagagtc |
376 |
Q |
| |
|
||||||||| |
|
|
| T |
14895007 |
tatagagtc |
14895015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 88 - 369
Target Start/End: Complemental strand, 16678871 - 16678589
Alignment:
| Q |
88 |
tgatcaatgaaatatgtcatagataaattatgaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttactgc-ag |
186 |
Q |
| |
|
|||||||| ||| |||||||| ||||| || ||||| ||| || ||||||||||||| || | | ||||| ||| ||| | |||||||||| ||| || |
|
|
| T |
16678871 |
tgatcaataaaagatgtcatacataaactacgaatacaacaaattactctatagtttgattaataaaacttaaaataggtccactaaccttcactattag |
16678772 |
T |
|
| Q |
187 |
gagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccattt |
286 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||||| || |||||| ||||||||||| |
|
|
| T |
16678771 |
gaactcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccattt |
16678672 |
T |
|
| Q |
287 |
cctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttta |
369 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||| | ||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
16678671 |
cctaataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattctttta |
16678589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 190 - 380
Target Start/End: Complemental strand, 18117517 - 18117327
Alignment:
| Q |
190 |
ctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcct |
289 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | ||||||||||| ||||||||||||||||| |
|
|
| T |
18117517 |
ctcagtttcagcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcct |
18117418 |
T |
|
| Q |
290 |
aatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||| ||||||| |||||| |
|
|
| T |
18117417 |
aataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatca |
18117327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 19426231 - 19426061
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| |||| |||| || | ||||||||||||||||||| ||||||| ||||| || ||||||||||||| |
|
|
| T |
19426231 |
tttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccac |
19426132 |
T |
|
| Q |
310 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19426131 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatca |
19426061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 183 - 376
Target Start/End: Complemental strand, 19355283 - 19355090
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| |||||||| ||||||| |||||||| |||| || | ||||||||||||||||||||||| |
|
|
| T |
19355283 |
gcaggagctcaatttcttttaaacccgtttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctcc |
19355184 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtc |
376 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19355183 |
attttctaattagaaacaaagaacggcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtc |
19355090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 165 - 380
Target Start/End: Complemental strand, 18148405 - 18148189
Alignment:
| Q |
165 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
263 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| ||| ||||||||||||||||||||| |||| ||| |||||||| | |||||| |||| || | ||| |
|
|
| T |
18148405 |
gtttaactaaccttaactagcaggagctcagcttcggcgaaagctatttaactttacgatcacagtaacatagagatagtcacccactctatcaactaac |
18148306 |
T |
|
| Q |
264 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
363 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
18148305 |
cgaaagtacgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
18148206 |
T |
|
| Q |
364 |
cttttatagagtcatca |
380 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
18148205 |
ctcttatagattcatca |
18148189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 165 - 380
Target Start/End: Complemental strand, 19462767 - 19462551
Alignment:
| Q |
165 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
263 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||| |||| || | ||| |
|
|
| T |
19462767 |
gtttaactaaccttaactagcaggagctcagtttctgcgaaagctatttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaac |
19462668 |
T |
|
| Q |
264 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
363 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
19462667 |
cgaaagtacgcatgcctccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
19462568 |
T |
|
| Q |
364 |
cttttatagagtcatca |
380 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
19462567 |
ctcttatagattcatca |
19462551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 170 - 380
Target Start/End: Complemental strand, 18105078 - 18104867
Alignment:
| Q |
170 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
268 |
Q |
| |
|
||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | |||||||| |
|
|
| T |
18105078 |
actaaccttaactagcaggagctcagtttcggcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaa |
18104979 |
T |
|
| Q |
269 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttt |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||||| | || ||| |||||||||| |||||||| |||| |||||| || ||| || |
|
|
| T |
18104978 |
gtatgcatgcctccatttcctaataagaaacatagaaccgaaaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctctt |
18104879 |
T |
|
| Q |
369 |
atagagtcatca |
380 |
Q |
| |
|
||||| |||||| |
|
|
| T |
18104878 |
atagattcatca |
18104867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 19415747 - 19415557
Alignment:
| Q |
188 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||| |||||||| ||| | | |||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
19415747 |
agctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcatttt |
19415648 |
T |
|
| Q |
288 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcat |
378 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
19415647 |
ctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttcatagaatcat |
19415557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 19438497 - 19438317
Alignment:
| Q |
200 |
gcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaac |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || | ||||| ||| || | ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
19438497 |
gcgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaac |
19438398 |
T |
|
| Q |
300 |
aaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||| ||||||| |||||| |
|
|
| T |
19438397 |
atagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatca |
19438317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 348
Target Start/End: Original strand, 24493200 - 24493377
Alignment:
| Q |
170 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
268 |
Q |
| |
|
||||||||| ||| |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||| | ||||||| ||||||| |||||||| | |
|
|
| T |
24493200 |
actaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggta |
24493297 |
T |
|
| Q |
269 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatcc |
348 |
Q |
| |
|
||| || ||||||||||||||||| ||||| |||| |||||| ||| ||| |||||| || |||| ||||||||||||| |
|
|
| T |
24493298 |
gtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccatcc |
24493377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 354
Target Start/End: Original strand, 24496662 - 24496823
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||| ||| |||||| || |||||| ||||| || |
|
|
| T |
24496662 |
gcaggagctcaattttagtgaaaattatttaaatttaccatcaaagttacatagagcttgt---------catcgataaactgatagtatgtatgcc-cc |
24496751 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagat |
354 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||| |||||| | |||||||||||||||| ||||||| |
|
|
| T |
24496752 |
atttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatgcctagat |
24496823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 19401469 - 19401415
Alignment:
| Q |
14 |
gatctgccatatgcttaatcacctgataaaatatgaagcaaaaaagatggataaa |
68 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
19401469 |
gatcttccacatgcataatcacctgataaaatatgaagcaaacaaaatggataaa |
19401415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19457018 - 19456972
Alignment:
| Q |
1 |
caaagctatgtaagatctgccatatgcttaatcacctgataaaatat |
47 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
19457018 |
caaagctatgcaagatcttccatatgcttaatcatctgataaaatat |
19456972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 25464801 - 25464760
Alignment:
| Q |
14 |
gatctgccatatgcttaatcacctgataaaatatgaagcaaa |
55 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
25464801 |
gatctgccatatgcataatgacctgataaaatatgaagcaaa |
25464760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 18017748 - 18017711
Alignment:
| Q |
29 |
taatcacctgataaaatatgaagcaaaaaagatggata |
66 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18017748 |
taatcacctgataaaatatgaagcaaacaaaatggata |
18017711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18148560 - 18148524
Alignment:
| Q |
19 |
gccatatgcttaatcacctgataaaatatgaagcaaa |
55 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
18148560 |
gccacatgcataatcacctgataaaatatgaagcaaa |
18148524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 88 - 380
Target Start/End: Complemental strand, 8461230 - 8460937
Alignment:
| Q |
88 |
tgatcaatgaaatatgtcatagataaattatgaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcag |
186 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| || | ||| | ||||| ||||||| ||||||||||||| || |||| |
|
|
| T |
8461230 |
tgatcaatgaaacatgtcatagataaattatgcataaaacaaaatattctatggtgtgttcaataaaacttaaagtaggttcactaacctttgctagcag |
8461131 |
T |
|
| Q |
187 |
gagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccattt |
286 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||| | ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
8461130 |
gagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccattt |
8461031 |
T |
|
| Q |
287 |
cctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
8461030 |
cctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatca |
8460937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 33 - 373
Target Start/End: Original strand, 2708855 - 2709195
Alignment:
| Q |
33 |
cacctgataaaatatgaagcaaaaaagatggataaa-caaaatactctatagtctctgatcaatgaaatatgtcatagataaattatgaataaaactaaa |
131 |
Q |
| |
|
||||||||||||||||||| ||| | ||| ||||| ||||||||||| |||| | ||||||| ||| |||||||| ||| ||| |||||||||| ||| |
|
|
| T |
2708855 |
cacctgataaaatatgaagaaaatgaaatgaataaaacaaaatactctctagttt--gatcaataaaacatgtcatacatatattgtgaataaaacaaaa |
2708952 |
T |
|
| Q |
132 |
tactctatagtttcatcacttaaactga-aagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagt |
229 |
Q |
| |
|
|| | |||||||| |||| | |||||| |||||| |||||||||||| ||| | || ||||| |||||| ||||| | |||||||||| ||||||||| |
|
|
| T |
2708953 |
tattgtatagtttgatcaat-aaactgtgaagtaggttcactaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatcatcaaagt |
2709051 |
T |
|
| Q |
230 |
tacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgct |
329 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||||| |||||||||| ||||||||||||||| |||||| || |
|
|
| T |
2709052 |
tacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaaaacctact |
2709151 |
T |
|
| Q |
330 |
gcaaatccaactcccatccctagatacaatgattcttttataga |
373 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2709152 |
gcaaatccaactcccatgcctagatacaatgattctcttataga |
2709195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 183 - 380
Target Start/End: Complemental strand, 15537101 - 15536904
Alignment:
| Q |
183 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
282 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
15537101 |
gcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatgcatgcctcc |
15537002 |
T |
|
| Q |
283 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15537001 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttagagtcatca |
15536904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 188 - 376
Target Start/End: Original strand, 13665385 - 13665573
Alignment:
| Q |
188 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
287 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| | |||||| ||||| || |||| || | |||||||||| |||||||||||||||| |
|
|
| T |
13665385 |
agctcagttcctgcgaaagctatttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccatttt |
13665484 |
T |
|
| Q |
288 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtc |
376 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || || | ||||||||||||||||||||| |
|
|
| T |
13665485 |
ctaataagaaacaaagaaccacatatcccccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattcttttatagagtc |
13665573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 22127 - 21957
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22127 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
22028 |
T |
|
| Q |
310 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
22027 |
aaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatca |
21957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 380
Target Start/End: Original strand, 2029 - 2199
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2029 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
2128 |
T |
|
| Q |
310 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
2129 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatca |
2199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 210 - 380
Target Start/End: Original strand, 2558 - 2729
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2558 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
2657 |
T |
|
| Q |
310 |
aaat-cccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
2658 |
aaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatca |
2729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 6944 - 6774
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6944 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
6845 |
T |
|
| Q |
310 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
6844 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatca |
6774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 12042 - 11872
Alignment:
| Q |
210 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
309 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12042 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
11943 |
T |
|
| Q |
310 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
380 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
11942 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatca |
11872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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