View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17262_low_9 (Length: 210)
Name: NF17262_low_9
Description: NF17262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17262_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 8958480 - 8958294
Alignment:
| Q |
8 |
tcgaagaatatcttgtgatggcagtgatgnnnnnnngtgagtagttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagacc |
107 |
Q |
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| T |
8958480 |
tcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtgcacaaagaagattaacataatcttgtacaccaacatcataaataagacc |
8958381 |
T |
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| Q |
108 |
agggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctgctttattatcatttccaatgtctttaat |
194 |
Q |
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| T |
8958380 |
agggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctgctttattatcatttccaatgtctttaat |
8958294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 8945632 - 8945773
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
149 |
Q |
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| T |
8945632 |
agttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaa |
8945731 |
T |
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| Q |
150 |
tgcaaaaggagttgctgctttattatcatttccaatgtcttt |
191 |
Q |
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| T |
8945732 |
tgcaagaggagttgcaacttcattacctttttcaatgtcttt |
8945773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 8963452 - 8963311
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
149 |
Q |
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| T |
8963452 |
agttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaa |
8963353 |
T |
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| Q |
150 |
tgcaaaaggagttgctgctttattatcatttccaatgtcttt |
191 |
Q |
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| T |
8963352 |
tgcaaaaggtgttgctgctatgttatcttttccaatgtcttt |
8963311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 8974848 - 8974702
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
149 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | || || || | |||||||||||| |
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| T |
8974848 |
agttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttg |
8974749 |
T |
|
| Q |
150 |
tgcaaaaggagttgctgctttattatcatttccaatgtctttaatga |
196 |
Q |
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| T |
8974748 |
tgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatga |
8974702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 9948103 - 9948217
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
149 |
Q |
| |
|
|||||||| || | |||||||||||||||||||| ||||||| ||||||| |||||| |||||||| |||||| | | || ||||| || |||||| || |
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| T |
9948103 |
agttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataactagctcctaa |
9948202 |
T |
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| Q |
150 |
tgcaaaaggagttgc |
164 |
Q |
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| T |
9948203 |
tgcaagaggagttgc |
9948217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 9949368 - 9949424
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagac |
106 |
Q |
| |
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| T |
9949368 |
agttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaagac |
9949424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 34962382 - 34962535
Alignment:
| Q |
17 |
atcttgtgatggcagtgatgnnnnnnngtgagtagttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaag |
116 |
Q |
| |
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| T |
34962382 |
atcttgtgatggtagtgatgtttttttgtgagtatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaag |
34962481 |
T |
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| Q |
117 |
tgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctgcttt |
170 |
Q |
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| T |
34962482 |
tgctctattaggattaacatgaccagctcccaatgcaaaaggtgttgctgcttt |
34962535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 21686795 - 21686936
Alignment:
| Q |
50 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
149 |
Q |
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|
|||||||||||||||||||||||| ||||||||| ||||| | |||||||| ||||||||| |||||||||||||| || |||| ||||||||||||||| |
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| T |
21686795 |
agttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaa |
21686894 |
T |
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| Q |
150 |
tgcaaaaggagttgctgctttattatcatttccaatgtcttt |
191 |
Q |
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| T |
21686895 |
tgcaaaaggagttgctgctctgttaccatttccaatgtcttt |
21686936 |
T |
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