View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17263_high_3 (Length: 360)

Name: NF17263_high_3
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17263_high_3
NF17263_high_3
[»] chr1 (7 HSPs)
chr1 (163-318)||(48043874-48044030)
chr1 (1-78)||(48043656-48043734)
chr1 (4-73)||(48051632-48051701)
chr1 (2-66)||(48056904-48056968)
chr1 (10-77)||(48045485-48045552)
chr1 (123-161)||(48043794-48043832)
chr1 (168-260)||(48057003-48057095)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 48043874 - 48044030
Alignment:
Q  163 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcac-aaaaaatggatgataattgt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48043874 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaaatggatgataattgt 48043973  T
Q  262 cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043974 cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagt 48044030  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48043656 - 48043734
Alignment:
Q  1 aatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaaccagcagtggaatccc 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48043656 aatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaaccagcagtggaatccc 48043734  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 48051632 - 48051701
Alignment:
Q  4 cttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtgga 73  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  48051632 cttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttagaaccagcagtgga 48051701  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 48056904 - 48056968
Alignment:
Q  2 atcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag 66  Q
    ||||||| ||||  |||||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  48056904 atcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag 48056968  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
Q  10 tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc 77  Q
    |||| ||||||||||||||||||   ||||||||||||| |||||||||| |||||||| | ||||||    
T  48045485 tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc 48045552  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
Q  123 ggaattgaatctgagatcacccttatcactccattcttt 161  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  48043794 ggaatcgaatctgagatcacccttatcactccattcttt 48043832  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 48057003 - 48057095
Alignment:
Q  168 atggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaatggatgataattg 260  Q
    |||||||||| |||||||  |||||| |||||||||| |  ||||||||||| | || ||   |||||| ||| ||||| |||||||||||||    
T  48057003 atggagttcatttcttgagacaggtagattctcataatcacctgcatcaacaacgtaacttagagttccggcaaaaaaagtggatgataattg 48057095  T

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