View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17263_high_4 (Length: 253)
Name: NF17263_high_4
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17263_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 39439851 - 39439670
Alignment:
| Q |
18 |
agcaatttcatactcaatcccttctaccaagttccattcacttcacaccaaaaccacaagaattcaatcctctaacctcgcttttcctattcgcacatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39439851 |
agcaatttcatactcaatcccttctaccaagttccattcacttcacaccaaaaccacaagaattcaatcctctaacctcgcttttcctattcgcacatcc |
39439752 |
T |
|
| Q |
118 |
ccaatttctatcaaacctctctattcttccaaattcctcattctccatcatcataaacttcgttgttccgcaaatcacaccg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39439751 |
ccaatttctatcaaacctctctattcttccaaattcctcattctccatcatcataaacttcgttgttccgcaaatcacaccg |
39439670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 41447981 - 41448102
Alignment:
| Q |
18 |
agcaatttcatactcaatcccttctaccaagttccattcacttcaca------ccaaaaccacaagaattcaatcctctaacctcgcttttcctattcgc |
111 |
Q |
| |
|
||||||||| ||||| || || | |||||| |||||||||||||||| |||||||||||||||| ||||| || ||| || ||| |||| ||| | |
|
|
| T |
41447981 |
agcaatttcgtactcgattccctttaccaaattccattcacttcacatccacaccaaaaccacaagaatccaatcttccaacttcacttgtcctcttctc |
41448080 |
T |
|
| Q |
112 |
acatccccaatttctatcaaac |
133 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
41448081 |
ccttccccaatttcaatcaaac |
41448102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University