View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17263_high_6 (Length: 235)
Name: NF17263_high_6
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17263_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21532168 - 21531949
Alignment:
| Q |
1 |
tacattcttcctctttatttatagttttttgtacttcattctttacatgcatttattgtgttcagtggcaaaatacatgttgccattaccctctatgtga |
100 |
Q |
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| T |
21532168 |
tacattcttcctctttatttatagttttttatacttcactctttacatgcatttattgtgttaagtggcaaaatactttttgcccttaccttctatgtga |
21532069 |
T |
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| Q |
101 |
atattactgtaagaatccacgacaggtcctagtgttagggattctagctaaagttactttcatagcttttggggagcaattaaatctgctaatctccaaa |
200 |
Q |
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| T |
21532068 |
atattacagtaagaatccacgataggtcctagtcttagggattctagccaaagttactttcatagcttttggggagcaattaaatctgctattctccaaa |
21531969 |
T |
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| Q |
201 |
ctctttttaggatagtttat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
21531968 |
ctctttttaggatagtttat |
21531949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 21530687 - 21530484
Alignment:
| Q |
17 |
atttatagttttttgtacttcattctttacatgcatttattgtgttcagtggcaaaatacatgttgccattaccctctatgtgaatattactgtaagaat |
116 |
Q |
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| T |
21530687 |
atttatagttttttgtacttcattctttacatgcatttattgtgtttagtggcaaaatactttttcctcttattctctctttgaatattacggtaagaat |
21530588 |
T |
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| Q |
117 |
ccacgacaggtcctagtgttagggattctagctaaagttactttcatagc-ttttggggagcaattaaatctgctaatctccaaactctttttaggatag |
215 |
Q |
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| T |
21530587 |
tcatgattgatccaagtgttagggattctagccaaagttactttcatagctttttggggagcaattaaatctgctattctccaaactctttttaggatag |
21530488 |
T |
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| Q |
216 |
ttta |
219 |
Q |
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|||| |
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| T |
21530487 |
ttta |
21530484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 21528047 - 21527833
Alignment:
| Q |
5 |
ttcttcctctttatttatagttttttgtacttcattctttacatgcatttattgtgttcagtggcaaaatacatgttgccattaccctctatgtgaatat |
104 |
Q |
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| T |
21528047 |
ttcttcctcttcgtttattgttttttgtactttattctttacatgcatttgctgtgttaagtggcaaaatactctttcctcttatcctatctgtgaatat |
21527948 |
T |
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| Q |
105 |
tactgtaagaatccacgacaggtcctagtgttagggattctagctaaagttactttcatagcttttggggagcaattaaatctgctaatctccaaactct |
204 |
Q |
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| T |
21527947 |
tacggtgagaatccatgataggtcctagtgttagggattcttgccaaatttactttcatagcttttggggagcaattaaatctgcttttctccgaactat |
21527848 |
T |
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| Q |
205 |
ttttaggatagttta |
219 |
Q |
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||||| ||||||||| |
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| T |
21527847 |
ttttatgatagttta |
21527833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 21525575 - 21525479
Alignment:
| Q |
124 |
aggtcctagtgttagggattctagctaaagttactttcatagcttttggggagcaattaaatctgctaatctccaaactctttttaggatagtttat |
220 |
Q |
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| T |
21525575 |
aggtcttagtgttagggattctagccaaagttactttcatagcttttagggagcaattaactctgcttttctgcaagctctttttaggatagcttat |
21525479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 21526495 - 21526425
Alignment:
| Q |
8 |
ttcctctttatttatagttttttgtacttcattctttacatgc--atttattgtgttcagtggcaaaatac |
76 |
Q |
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| T |
21526495 |
ttcctcttcatttatagttttttgtagttcattatttacatgcatatttattgtgttcagtggcaaaatac |
21526425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 21527130 - 21527193
Alignment:
| Q |
157 |
ctttcatagcttttggggagcaattaaatctgctaatctccaaactctttttaggatagtttat |
220 |
Q |
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|||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
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| T |
21527130 |
ctttcatagcttttggggagcaattaaatctgtttttctccgaactctttttaggatagtttat |
21527193 |
T |
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