View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17263_low_2 (Length: 463)
Name: NF17263_low_2
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17263_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 9160704 - 9160958
Alignment:
| Q |
16 |
agtacctcctccgttgtaccggtttgccgcagcacgagcaccgcagccgtgtcatcattagctctatttttggacagatcagttaccatgttttcaaaag |
115 |
Q |
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| T |
9160704 |
agtacctcctctgttgtaccggtttgccgcagcacgagcaccgcagccgtgtcatcattagctctatttttggacagatcagttaccata---------- |
9160793 |
T |
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| Q |
116 |
tgtacagggctaccaatggtgtgtataattttcaacagtgttatgggtaattatagaaaaatcataattttcaagagttttagaactctctcttgggtgc |
215 |
Q |
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| T |
9160794 |
---------ctaccaatggtgtgtataattttcaacagtgttatgggtatatatagaaaaatcataattttcaagagttttagaactctctcttggatgc |
9160884 |
T |
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| Q |
216 |
aatttatgtaagggtttatgcaactttagagctagctcccaaactcaacaatccaaatattattctcttcattt |
289 |
Q |
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| T |
9160885 |
aatttatgtaagggtttatgcaactttagagctagctcccaaactcaacaatccaaatattattctcttcattt |
9160958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 287 - 436
Target Start/End: Original strand, 9161009 - 9161159
Alignment:
| Q |
287 |
tttccaacccattgagttctcagttgagtctatattttcaagtaaggaagatattcatcccattctttgtccattaagaaatgattctaactttaataat |
386 |
Q |
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| T |
9161009 |
tttccaacccattgagttctctgttgagtctatattttcaagtaaggaagatattcatcccattctttgtccattaagaaatgattctaactttaataat |
9161108 |
T |
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| Q |
387 |
tcacttggtagagttccttgttca-ttcttttgtcaattttggtttcccac |
436 |
Q |
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| T |
9161109 |
tcacttggtagagttccttgttcatttcttttgtcaattttggtttcccac |
9161159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 9317253 - 9317196
Alignment:
| Q |
66 |
gtcatcattagctctatttttggacagatcagttaccatgttttcaaaagtgtacagg |
123 |
Q |
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| T |
9317253 |
gtcatcattagctcagtttccgaacagatcagttaccaagttttcaaaagtgtgcagg |
9317196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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