View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17263_low_3 (Length: 403)
Name: NF17263_low_3
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17263_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 48043227 - 48043601
Alignment:
| Q |
11 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
48043227 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt |
48043326 |
T |
|
| Q |
111 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48043327 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag |
48043426 |
T |
|
| Q |
211 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043427 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
48043526 |
T |
|
| Q |
311 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatgga |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043527 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatgga |
48043601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 153 - 403
Target Start/End: Original strand, 48056587 - 48056836
Alignment:
| Q |
153 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
252 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||| |
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| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
|
| Q |
253 |
aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcc |
352 |
Q |
| |
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||||||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| ||||||||||||| |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtct |
48056786 |
T |
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| Q |
353 |
cctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctg |
403 |
Q |
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| T |
48056787 |
ccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctg |
48056836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 154 - 334
Target Start/End: Original strand, 48051312 - 48051480
Alignment:
| Q |
154 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
253 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
|
| Q |
254 |
atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
334 |
Q |
| |
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||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48051412 |
atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 356
Target Start/End: Original strand, 48037329 - 48037528
Alignment:
| Q |
162 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
260 |
Q |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
|
| Q |
261 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
356 |
Q |
| |
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||||| | || ||| |||||||| ||||||| || ||||||||||||||||||||| | |||||||||| || ||||||| |||| |||||||||| |
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| T |
48037429 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 48051481 - 48051585
Alignment:
| Q |
299 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
398 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||| |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
|
| Q |
399 |
tcctg |
403 |
Q |
| |
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||||| |
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|
| T |
48051581 |
tcctg |
48051585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 48045200 - 48045331
Alignment:
| Q |
175 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca |
271 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || |
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| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg |
48045293 |
T |
|
| Q |
272 |
aattactgagtcaatgttgttggagtttttacatgaga |
309 |
Q |
| |
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|| |||||| |||||||| || ||||||||||||||| |
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| T |
48045294 |
cataactgagccaatgttggtgtagtttttacatgaga |
48045331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
| Q |
11 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
92 |
Q |
| |
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||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
48051132 |
gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
| Q |
11 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca |
90 |
Q |
| |
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||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
48056456 |
gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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