View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17263_low_7 (Length: 239)
Name: NF17263_low_7
Description: NF17263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17263_low_7 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 34389913 - 34389720
Alignment:
| Q |
46 |
tttgtacgtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgcttt |
145 |
Q |
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| T |
34389913 |
tttgtacgtttgcttctccattggccaatggtagtggttgtttatggtggatttgggcgtgggttgttatcggaggatttgggctgatttgcagtgcttt |
34389814 |
T |
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| Q |
146 |
ggggtggtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttc |
239 |
Q |
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| T |
34389813 |
ggggtggtggtggtgatgtggtgtgaggaggtcaagggtttcaggatccgggaagtgttattcagatctgccgtttttgctccaccattggttc |
34389720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 41919642 - 41919836
Alignment:
| Q |
46 |
tttgtacgtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgcttt |
145 |
Q |
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| T |
41919642 |
tttgtacatttgtttctccattggtcaatggtggtggttgtttatggtggatttgggcgtgggttgttatcggaggatttgggctggtttgcggtgcttt |
41919741 |
T |
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| Q |
146 |
-ggggtggtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttc |
239 |
Q |
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| T |
41919742 |
gggggtggtggtggtgatgtggtgtgaggaggtcaagggtttcgggatccggtaagtgttgttcagatccgccgtttttgctccaccattggttc |
41919836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 38305418 - 38305516
Alignment:
| Q |
53 |
gtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgctttggggtg |
151 |
Q |
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| T |
38305418 |
gtttgcttttccattggccaattgtggtggttgtttccaatggtttcgggcgtgggttgtttttggaggttttgggctggattacggtgctttggggtg |
38305516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 30963714 - 30963755
Alignment:
| Q |
47 |
ttgtacgtttgcttctccattggccaatggtggtggttgttt |
88 |
Q |
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| T |
30963714 |
ttgtacgtttgcttcttcattggccaatggtggtggttgttt |
30963755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 30963762 - 30963817
Alignment:
| Q |
184 |
tttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttc |
239 |
Q |
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| T |
30963762 |
tttcgcgattcaggaagtgctgttcagatccgccgttttttctccaccattggttc |
30963817 |
T |
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