View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_10 (Length: 527)
Name: NF17264_high_10
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 11760222 - 11759933
Alignment:
| Q |
18 |
ttacagatactccatcttacaaatttcttttttcgaacaagtacaaggagtcaaggaccatatatgttcttagnnnnnnnnagggtgtttttcatatacg |
117 |
Q |
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| T |
11760222 |
ttacaaatactccatcttacaaatttcttttttcgaacaagtacaaggagtcaaggaccatatatgttcttagttttttt-agggtgtttttcatatacg |
11760124 |
T |
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| Q |
118 |
tttaaaatctccaaagcatacagcagcccaaagcctgtagttgagaattaacattattcagctatgatagttctgtaatatgcagttcgagccacttcac |
217 |
Q |
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| T |
11760123 |
tttaaaatctccaaagcatacagcagtccaaagcctatagttgagaattaacattattcaactctgatagttctgtaatatgcagttcgagccacttcac |
11760024 |
T |
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| Q |
218 |
nnnnnnngcctgatatcttcatgcatcttcaacgatgcttcggaaaatttggtcagtcgatcaagaaccttagttaaacttgcatgtacac |
308 |
Q |
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| T |
11760023 |
tttttttgcctgatatcttcatgcatcttcaacgatgcttcggaaaatttggtcagttgatcatggaccttggttaaacttgcatgtacac |
11759933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 27 - 308
Target Start/End: Original strand, 38040479 - 38040766
Alignment:
| Q |
27 |
ctccatcttacaaatttcttttttcgaacaagtacaaggagtcaaggaccatatatgttcttagnnnnnnnn-agggtgtttttcatatacgtttaaaat |
125 |
Q |
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| T |
38040479 |
ctccatcttacaaatttcttttttcaaacaagtacaagtagtcaagtaccatatatgttcatagtttttttttagggtgtttttcatatacgtttaaaat |
38040578 |
T |
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| Q |
126 |
ctccaaagcatacagcagcccaaagcctgtagttgagaattaacattattcagctatgatagttc------tgtaatatgcagttcgagccacttcacnn |
219 |
Q |
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| T |
38040579 |
ctccaaaacatacagcagcacaaagcctgtagttgagaattaacatttttcagctctgatagttctgcaattgtaatatgcagttcgagccacttcac-t |
38040677 |
T |
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| Q |
220 |
nnnnngcctgatatcttcatgcatcttcaacgatgcttcggaaaatttggtcagtcgatcaagaaccttagttaaacttgcatgtacac |
308 |
Q |
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| T |
38040678 |
tttttgcctgatatcttcatacatcttcaacgatgcttcggataatttggtcagtcgatcaagaaccttggttaaacttgcatgtacac |
38040766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 48737946 - 48737653
Alignment:
| Q |
18 |
ttacagatactccatcttacaaatttcttttttcgaacaagtacaaggagtcaaggaccatatatgttcttagnnnnnnnnag--ggtgtttttcatata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||| |||||||||| |||| |
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| T |
48737946 |
ttacagatactccatcttacaaatttcttttttcgaacaagtgcatagagtcaaagaccatatatgttcatagtttttttttttaggtgtttttcgtata |
48737847 |
T |
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| Q |
116 |
cgtttaaaatctccaaagcatacagcagcccaaagcctgtagttgagaattaacattattcagctatgatagttc------tgtaatatgcagttcgagc |
209 |
Q |
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| T |
48737846 |
cgtttaaaatctccaaagcatatagcagcccaaagcctgtagttgagaattaacattattcagctctgatagttctgcaattgtaatatacaattcgagc |
48737747 |
T |
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| Q |
210 |
cacttcacnnnnnnngcctgatatcttcatgcatcttcaacgatgcttcggaaaatttggtcagtcgatcaagaaccttagttaaacttgcatgt |
304 |
Q |
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| T |
48737746 |
cacttctc-ttttttgcctgatatcttcatacatcttgaacgatgcttcggaaaatttggtcagtcgatcaagaaccttggttaaacttgcatgt |
48737653 |
T |
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