View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_15 (Length: 473)
Name: NF17264_high_15
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_15 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 29 - 467
Target Start/End: Original strand, 99947 - 100386
Alignment:
| Q |
29 |
tatttatccactaaacactccctccatgttcttaagggcaatcctacacatttaagatcaacacatccttcacaaattctcagagataaattttggggca |
128 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
99947 |
tatttatccattaaacactccctccatgttcttaagggcaatcctacacttttaagatcaacacatccttcacaaattctcagagataaattttggggca |
100046 |
T |
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| Q |
129 |
tcatgaatgctggctaagaatattttacttgacatcaaactcttttgttgcaattgataaggttagcatggtgtttttgcatctcatccctattccccta |
228 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
100047 |
tcatgaatgctggctaagaatattttacttgtcatcaaactcttttgttgcaattgataaggttagcatggtgtttttgcatctcatccctattccccta |
100146 |
T |
|
| Q |
229 |
cagtttgcagctttgttctattgtgaaattcaaaggcatccaatgttacatgacttttatcctcactttgaggcaagataatatgtgtgcatattggcct |
328 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
100147 |
cagtttgtagctttgttctattgtgaaattcaaaggtatccaatgttacatgacttttatcctcactttgaggcaagataatatgtgtgcatattggcct |
100246 |
T |
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| Q |
329 |
gtcgaaaatggaacttctcaaaattcttcttagtttatctttgtgtccccta-cccctaatcatcttattctatcagacattatatgatgcttaagagtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
100247 |
gtcgaaaatggaacttctcaaaattcttcttagtttatctttgtgtcccctaccccctaatcatcttattctatcaaacattatatgatgcttaagagtt |
100346 |
T |
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| Q |
428 |
agtattttcctatgatcagttatttgtctgtttcttatca |
467 |
Q |
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| T |
100347 |
agtattttcctatgatcagttatttgtctgtttcttatca |
100386 |
T |
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Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 29 - 467
Target Start/End: Original strand, 41082815 - 41083254
Alignment:
| Q |
29 |
tatttatccactaaacactccctccatgttcttaagggcaatcctacacatttaagatcaacacatccttcacaaattctcagagataaattttggggca |
128 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082815 |
tatttatccattaaacactccctccatgttcttaagggcaatcctacacttttaagatcaacacatccttcacaaattctcagagataaattttggggca |
41082914 |
T |
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| Q |
129 |
tcatgaatgctggctaagaatattttacttgacatcaaactcttttgttgcaattgataaggttagcatggtgtttttgcatctcatccctattccccta |
228 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082915 |
tcatgaatgctggctaagaatattttacttgtcatcaaactcttttgttgcaattgataaggttagcatggtgtttttgcatctcatccctattccccta |
41083014 |
T |
|
| Q |
229 |
cagtttgcagctttgttctattgtgaaattcaaaggcatccaatgttacatgacttttatcctcactttgaggcaagataatatgtgtgcatattggcct |
328 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41083015 |
cagtttgtagctttgttctattgtgaaattcaaaggtatccaatgttacatgacttttatcctcactttgaggcaagataatatgtgtgcatattggcct |
41083114 |
T |
|
| Q |
329 |
gtcgaaaatggaacttctcaaaattcttcttagtttatctttgtgtccccta-cccctaatcatcttattctatcagacattatatgatgcttaagagtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41083115 |
gtcgaaaatggaacttctcaaaattcttcttagtttatctttgtgtcccctaccccctaatcatcttattctatcaaacattatatgatgcttaagagtt |
41083214 |
T |
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| Q |
428 |
agtattttcctatgatcagttatttgtctgtttcttatca |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41083215 |
agtattttcctatgatcagttatttgtctgtttcttatca |
41083254 |
T |
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