View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_18 (Length: 446)
Name: NF17264_high_18
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 51911222 - 51910795
Alignment:
| Q |
1 |
tccaatttgttcagaagaagatagagcttctcttctcagctttaaagcaagcatttcgagtgacacaacagatactttatctacatgggtaggccgagat |
100 |
Q |
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| T |
51911222 |
tccaatttgttcagaagaagatagagcttctcttctcagctttaaagcaagcatttcgagcgacacaacagatactttatctacatgggtaggccgagat |
51911123 |
T |
|
| Q |
101 |
tgctgcgacggagggtgggaaggagttcaatgtaatccatccacaggtagagttaatgtgttgcagatacaaaattctaatgttagagatagtggcactt |
200 |
Q |
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| T |
51911122 |
tgctgcgacggagggtgggaaggagttcaatgtcatccatccacaggtagagttaatgtgttgcagatacaaaattctaatgttagagatagtggcactt |
51911023 |
T |
|
| Q |
201 |
atatgaagggcactctttctccagcacttggcaatttgcatttcttagaggtattgatgataagtgggatgaagcatattacaggaccaattccttccag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51911022 |
atatgaagggcactctttctccagcacttggcaatttgcatttcttagaggtattgatgataagtgggatgaagcatattacaggaccaattccttctag |
51910923 |
T |
|
| Q |
301 |
tttctcaaatttaacctacctcacacatcttgttcttgatgataattcacttggagggtgcatgcctccaagcttagatcgtttgtccttacttcaaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51910922 |
tttctcaaatttaacctacctcacacatcttgttcttgatgataattcacttggagggtgcatgcctccaagcttaggtcgtttgtccttacttcaaaca |
51910823 |
T |
|
| Q |
401 |
atttcaatgagtggtaaccatctgaaag |
428 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
51910822 |
atttcattgagtggtaaccatctgaaag |
51910795 |
T |
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