View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_20 (Length: 418)
Name: NF17264_high_20
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 262903 - 263309
Alignment:
| Q |
1 |
ctttatgaattaattctttaatacacacttaaatatttcattttagaatgaccagaaagggccttaatcgtggttttgaactacattaacaatgataaca |
100 |
Q |
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| T |
262903 |
ctttatgaattaattctttaatacacacttaaatatttcattttagaatgaccataaagggccttaatcgtggttttgaactatattaacaatgataaca |
263002 |
T |
|
| Q |
101 |
tcattttactgcgaaataaagtcatcaaaagatggaagaccggaaaaatatgttgggtagcattggatctcatattgacttgtatcaaacaattgatcaa |
200 |
Q |
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| T |
263003 |
tcattttactgcgaaataaagtcatcaaaagatggaagaccggaaaaatatgttgggtagcattggatctcatattgacttgtatcaaacaattgattaa |
263102 |
T |
|
| Q |
201 |
agaagttgttggtggtgatgtgatcg----nnnnnnncttttgttggtcatggcgaccaaaagttgaagaagaagttgaaaaacagctcaagatttatgg |
296 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
263103 |
agaagttgttggtggtgatgtgatcgtttttttttttcttttgttggtcatggcgaccaaaagttgaagaagaagttgaaaaacagctcaagatttatgg |
263202 |
T |
|
| Q |
297 |
aaaaattcaatgcattcaaaatgaaacacaacactatgaaaggtaatgtgttttgtttttcattttaagtcattgtatgtggtttgttttgatcagcgta |
396 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| || |
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| T |
263203 |
aaaaattcaatgcattcagaatgaaacacaacactattaaaggtaatgtgttttgtttttcattttaagtcgttgtatatggtttgttttgattagcata |
263302 |
T |
|
| Q |
397 |
attatat |
403 |
Q |
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| T |
263303 |
attatat |
263309 |
T |
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