View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17264_high_23 (Length: 403)
Name: NF17264_high_23
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 39882955 - 39883337
Alignment:
| Q |
1 |
ctttatgtaacgcgagctataaaataatttgaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatgaaggtagttttat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
39882955 |
ctttatgtaacgtgagctataaaataatttaaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatgcaagtagttttat |
39883054 |
T |
|
| Q |
101 |
accaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39883055 |
accaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgat |
39883154 |
T |
|
| Q |
201 |
gcatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39883155 |
gtatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaa |
39883254 |
T |
|
| Q |
301 |
tggaacttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtgtggattctttggaa |
383 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39883255 |
tggaacttgacgtgcaaggaaattgttaatataccttgagattggtctatattttttggagttatggtgtggactctttggaa |
39883337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 40645543 - 40645378
Alignment:
| Q |
205 |
gagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatgga |
304 |
Q |
| |
|
|||||||||| || || ||| |||||||||| ||||| || ||||||||| |||||||| |||||| | ||||| ||||||||||||||| |||||| |
|
|
| T |
40645543 |
gagattgtgaggacactaaggagctttggtca-agggtcataaaagaagaatattggagttagttctccaggctcgatctttttgtttggattgaatgga |
40645445 |
T |
|
| Q |
305 |
acttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtgtgg |
372 |
Q |
| |
|
|||| | ||| | ||| | || |||| || |||| ||||||| ||| || |||||||| ||||||||| |
|
|
| T |
40645444 |
acttaacgtgtaaggagaatgataattta-cttgggattggtatattttctttggagtcatggtgtgg |
40645378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 36826426 - 36826512
Alignment:
| Q |
283 |
ctttttgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtg |
369 |
Q |
| |
|
||||||| ||||||| ||| |||||||| ||| | ||| |||| |||| || |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
36826426 |
ctttttgcttggattgaatagaacttgacgtgtaaggacattggtaatgtaacttgagattgttctatcttctttggagttatggtg |
36826512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University