View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_high_29 (Length: 375)

Name: NF17264_high_29
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_high_29
NF17264_high_29
[»] chr4 (5 HSPs)
chr4 (1-365)||(48912107-48912471)
chr4 (2-354)||(48958198-48958550)
chr4 (5-365)||(48965386-48965743)
chr4 (11-222)||(48961356-48961567)
chr4 (116-243)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-351)||(6287-6637)
scaffold0536 (5-365)||(10257-10615)
[»] chr6 (2 HSPs)
chr6 (7-354)||(12589942-12590292)
chr6 (8-354)||(12483237-12483586)
[»] chr2 (3 HSPs)
chr2 (11-263)||(13448426-13448675)
chr2 (11-301)||(13440263-13440550)
chr2 (11-204)||(13454897-13455087)
[»] chr7 (1 HSPs)
chr7 (11-323)||(3417334-3417643)
[»] chr5 (2 HSPs)
chr5 (100-301)||(28385483-28385684)
chr5 (16-306)||(12540753-12541040)
[»] chr8 (1 HSPs)
chr8 (15-255)||(12641353-12641593)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 48912471 - 48912107
Alignment:
Q  1 aacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912471 aacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttc 48912372  T
Q  101 ttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48912371 ttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtccgtttcttttcaggaacaacccata 48912272  T
Q  201 tgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48912271 tgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgtacaccaccgagtt 48912172  T
Q  301 atcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912171 atcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 48912107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 354
Target Start/End: Original strand, 48958198 - 48958550
Alignment:
Q  2 acagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttct 101  Q
    |||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| ||| |||| |||| | | ||||    
T  48958198 acagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttct 48958297  T
Q  102 tctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatat 201  Q
    ||||||| ||  |||||||||| || || || |||||||| ||| |||||||||||||| | || |  ||  ||| |||||| ||||||||||||||||     
T  48958298 tctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaacccatac 48958397  T
Q  202 gaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 301  Q
     ||||||||||  |||||||| ||||| |||||||||||||||||||||||||| || |||| ||||  |||||||||||||||||||| ||| ||||||    
T  48958398 aaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagtta 48958497  T
Q  302 tcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc 354  Q
    | |   ||| |||| |||||||||| |||  | |||||||| |||||| ||||    
T  48958498 tgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctc 48958550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 365
Target Start/End: Original strand, 48965386 - 48965743
Alignment:
Q  5 gtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttct 104  Q
    ||||| ||||| |||||||| |||||||| |||||||| || | |||||||||||||| |||||| |||||||||||| ||||||||| | |   |||||    
T  48965386 gtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttct 48965482  T
Q  105 ttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 204  Q
    |||| ||  |||||||||| || |||||||| ||||| ||||  |||||||||||| | |||| |||  |||  || ||    |||| ||||||||| ||    
T  48965483 ttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaa 48965582  T
Q  205 ttcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatct 304  Q
     || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  | || ||||  |||||||||||| |||||||| ||| ||||||| |    
T  48965583 atcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagttatgt 48965682  T
Q  305 tgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 365  Q
     | || || || ||||||||||||||||| ||||| |||||  ||||||||| ||| ||||    
T  48965683 cgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctct 48965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 48961356 - 48961567
Alignment:
Q  11 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 110  Q
    |||||||| ||||| ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | |    
T  48961356 ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaa 48961455  T
Q  111 taattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtg 210  Q
    |  ||||||||||||| || || |||||||| || ||||||||||||||  | |||| | |  ||| ||| || ||||||||||||||||  ||||||||    
T  48961456 tgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttcccttttttctcaggaacaacccatacaaattcgtg 48961555  T
Q  211 actcgatgcttc 222  Q
    || |||||||||    
T  48961556 acccgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
Q  116 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 215  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  216 atgcttcaatcccgcacgcaatctcata 243  Q
    || |||| ||| |||  |||||||||||    
T  48951499 attcttctatcgcgcttgcaatctcata 48951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 6637 - 6287
Alignment:
Q  1 aacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttc 100  Q
    |||||||||||||||||||||||| |||||||| |||||||  ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||    
T  6637 aacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 6538  T
Q  101 ttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccata 200  Q
    |||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | ||||  ||  ||| |||||| ||||||||||||||||    
T  6537 ttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttcttctcaggaacaacccata 6438  T
Q  201 tgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtt 300  Q
    |||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||||| ||| |||||    
T  6437 tgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagtt 6338  T
Q  301 atcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 351  Q
    |||| | |||||||  |||||||||| |||||| |||||||||||||||||    
T  6337 atctggcttcgagtctagccaactcagacactcatgcacactcacaacact 6287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 5 - 365
Target Start/End: Complemental strand, 10615 - 10257
Alignment:
Q  5 gtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttct 104  Q
    ||||||||||||||||||||||||||||| ||||||||  | |||||||| |||||||||||||| || ||||||||||||||||||| | |||||||||    
T  10615 gtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttct 10516  T
Q  105 ttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 204  Q
    || | |||| ||| |||||||| || || || | |||||||||||||||||||| | | |||| |||  ||| |||||| ||||||||||| ||||  ||    
T  10515 ttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactctcattctctttccctttcttctcaggaacaactcatacaaa 10416  T
Q  205 ttcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatct 304  Q
    ||||| || ||||||||| | || ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| ||| ||  |||||    
T  10415 ttcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgtacaacactga--tatct 10318  T
Q  305 tgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct 365  Q
     | ||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  10317 cgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctct 10257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 12590292 - 12589942
Alignment:
Q  7 ggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttcttt 106  Q
    ||||||||| ||||||||||||||||| || ||||| ||  ||||||||| |||||| || ||||| ||||||||| |||| |||| | |||||||||||    
T  12590292 ggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttcttt 12590193  T
Q  107 c---cgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatga 203  Q
    |   | ||  ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | ||||  ||| ||| ||| || || |||| |||||||| ||    
T  12590192 ctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgggaataacccatacga 12590093  T
Q  204 attcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatc 303  Q
    ||||||| |  |||||||| || || |||| ||||||||||||||||||||| || ||||  |||  ||| |||||||||||||||| ||| ||||||||    
T  12590092 attcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatc 12589993  T
Q  304 ttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc 354  Q
    | | |||||||| |||||||||| |||||| |||||  |||||||||||||    
T  12589992 tcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctc 12589942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 12483586 - 12483237
Alignment:
Q  8 gaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttc 107  Q
    |||||||| ||||| || ||||||||||||||||| || | |||||||| |||||  |||||||| ||||| ||| | || || | | || |||| || |    
T  12483586 gaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattcc 12483487  T
Q  108 cgataat---tctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 204  Q
       ||||   |||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||    
T  12483486 ttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaa 12483387  T
Q  205 ttcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatct 304  Q
    ||  | || ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || |||    
T  12483386 ttttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttct 12483287  T
Q  305 tgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc 354  Q
    || || ||||| ||||||||   |||||| ||||| ||||||||||||||    
T  12483286 tgctttgagtttagccaactttgacactcatgcacgctcacaacactctc 12483237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 13448426 - 13448675
Alignment:
Q  11 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 110  Q
    |||| ||| ||||| ||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| |||| | ||||||||   ||||    
T  13448426 ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccga 13448522  T
Q  111 taattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtg 210  Q
    || ||||||||||||| ||||| || ||||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||||||||  |||    
T  13448523 tatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacccatatgaatgggtg 13448622  T
Q  211 actcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 263  Q
    ||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  13448623 accggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 13440263 - 13440550
Alignment:
Q  11 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 110  Q
    |||| ||| ||||| ||||||||| | ||||| || | ||||||||  ||| |||| ||||| |||||||||||||| |||| | || || || |    |    
T  13440263 ttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctccta---a 13440359  T
Q  111 taattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtg 210  Q
    |  |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  |||    
T  13440360 tgtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtg 13440459  T
Q  211 actcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 301  Q
    ||| |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| ||||||||||    
T  13440460 actagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagtta 13440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 13454897 - 13455087
Alignment:
Q  11 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 110  Q
    |||| ||| ||||| ||||||||| | ||||| || | ||| ||||  ||| |||| ||||| ||||||||| |||| |||| | |||| ||||   |||    
T  13454897 ttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cga 13454993  T
Q  111 taattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 204  Q
    |  || |||||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13454994 tgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 3417643 - 3417334
Alignment:
Q  11 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 110  Q
    |||| ||||||||||||||||||| | || || || | ||||||||  |||  ||||||||| ||||||||| |||  |||| | |   ||||||||| |    
T  3417643 ttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctttccaa 3417547  T
Q  111 taattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtg 210  Q
    |  ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||||||||  |||    
T  3417546 tgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccatatgaatgggtg 3417447  T
Q  211 actcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttc 310  Q
    || ||||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| |||||| ||||||      
T  3417446 acccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagttaacttgttgt 3417347  T
Q  311 gagttaagccaac 323  Q
    ||||| |||||||    
T  3417346 gagttgagccaac 3417334  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 28385483 - 28385684
Alignment:
Q  100 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 199  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  200 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 299  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  300 ta 301  Q
    ||    
T  28385683 ta 28385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 12540753 - 12541040
Alignment:
Q  16 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataatt 115  Q
    ||||||||||||||||||| | ||||| || | ||||||||  ||| |||||||||| ||||||||| |||| |||| | |   ||| ||||| ||  ||    
T  12540753 cccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgttt 12540849  T
Q  116 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 215  Q
    ||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  ||||| |     
T  12540850 ctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgaccca 12540949  T
Q  216 atgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttg 306  Q
     | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| ||||    
T  12540950 ttccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttg 12541040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 12641593 - 12641353
Alignment:
Q  15 acccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataat 114  Q
    |||| ||||| ||||| ||||||||||| || | |||||| | |||||| || ||||| |||||  || |||| || | | | ||||| ||| | | | |    
T  12641593 acccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatt 12641494  T
Q  115 tctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactc 214  Q
    ||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||      
T  12641493 tctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacct 12641394  T
Q  215 gatgcttcaatcccgcacgcaatctcataaagttgtttatc 255  Q
    ||   ||| || |||| ||||||||| ||||||||||||||    
T  12641393 gaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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