View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_44 (Length: 296)
Name: NF17264_high_44
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_44 |
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| [»] scaffold1067 (1 HSPs) |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 43881153 - 43880887
Alignment:
| Q |
10 |
attattctccgaggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcg |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43881153 |
attattttccgaggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgttcggagagtgttctatgttcctcg |
43881054 |
T |
|
| Q |
110 |
gatgaagatgtggaagacacctacaattcactaaccttagctttattaagtacctctagattctcatccaagaatttaatcattcatgtcattgcaattg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881053 |
gatgaagatgtggaagacacctacaattcactaaccttaactttattaagtacctctagattctcatccaagaatttaatcattcatgtcattgcaattg |
43880954 |
T |
|
| Q |
210 |
ccatagtgacctgtcctacaatttcaaacgtggtacaataaaatcttgtgtacattagtttcaaagc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43880953 |
ccatagtgacctgtcctacaatttcaaacgtggtacaataaaatcttgtgtacattagcttcaaagc |
43880887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 29065362 - 29065299
Alignment:
| Q |
76 |
tagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagacacctacaattca |
139 |
Q |
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||||||||||| ||||||| | ||||| |||||||||||||||| ||||||| ||||| |||| |
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| T |
29065362 |
tagctcttgttctgagagtgatgtatgtacctcggatgaagatgtcgaagacatctacacttca |
29065299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 11240035 - 11239778
Alignment:
| Q |
21 |
aggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgt |
120 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
11240035 |
aggtttggcagttactaagttattttgcatgttatgttgcacaggacttgggcagtagctcttgttcgaagagtgttctatgttcctcggatgaagatgt |
11239936 |
T |
|
| Q |
121 |
ggaagacacctacaattcactaaccttagctttattaagtacctctagattctcatccaagaatttaatcattcatgtcattgcaattgccatagtgacc |
220 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11239935 |
ggaagacacctacaattcactaaccttaacttcattaagtacctctagattctcatacaagaatttgatcattcatgtcattgcaattgccatagtgacc |
11239836 |
T |
|
| Q |
221 |
tgtcctacaatttcaaacgtggtacaataaaatcttgtgtacattagtttcaaagcag |
278 |
Q |
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|||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
11239835 |
tgtcctacaatttcaaccgcggtacaataaaatcttgcgtacattagcttcaaagcag |
11239778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 22278344 - 22278234
Alignment:
| Q |
29 |
caattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagaca |
128 |
Q |
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||||||||||||||||| |||||||| || || ||||||| ||| ||||||||| |||||||||| | |||||||||||||| ||| |||||||| |
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| T |
22278344 |
caattactaagttatttaccatgttatattctactggacttggatagtggctcttgttcggagagtgttgtgtgttcctcggatgatgatacggaagaca |
22278245 |
T |
|
| Q |
129 |
cctacaattca |
139 |
Q |
| |
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| | ||||||| |
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| T |
22278244 |
cgttcaattca |
22278234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 267 - 370
Alignment:
| Q |
17 |
tccgaggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaag |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| ||| ||| |||||||||| || || ||||| |||| |||||||||||||||||||||||| |
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| T |
267 |
tccgaggtttggcaattactaagttattttgcattttatattgtacaggacttgggcaataactattgttcggagggtgttctatgttcctcggatgaag |
366 |
T |
|
| Q |
117 |
atgt |
120 |
Q |
| |
|
|||| |
|
|
| T |
367 |
atgt |
370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 13737800 - 13737903
Alignment:
| Q |
17 |
tccgaggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaag |
116 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| ||| ||| |||||||||| || || ||||| |||| |||||||||||||||||||||||| |
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| T |
13737800 |
tccgaggtttggcaattactaagttattttgcattttatattgtacaggacttgggcaataactattgttcggagggtgttctatgttcctcggatgaag |
13737899 |
T |
|
| Q |
117 |
atgt |
120 |
Q |
| |
|
|||| |
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|
| T |
13737900 |
atgt |
13737903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 7672167 - 7672061
Alignment:
| Q |
32 |
ttactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagacacct |
131 |
Q |
| |
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|||||||||||||||||||||||| ||| ||| || |||||||||||||||||| |||||||||| |||||||||| ||||| || |||||||||| | |
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| T |
7672167 |
ttactaagttattttgcatgttatattgtacagaacatgggcagtagctcttgttcggagagtgttgtatgttcctcagatgatcatatggaagacacgt |
7672068 |
T |
|
| Q |
132 |
acaattc |
138 |
Q |
| |
|
||||||| |
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|
| T |
7672067 |
acaattc |
7672061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 24026682 - 24026792
Alignment:
| Q |
29 |
caattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagaca |
128 |
Q |
| |
|
||||||||||||||||| |||||||| || ||| ||||||| ||| ||||||||| |||||||||| | |||||||||||||| || |||||||| |
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| T |
24026682 |
caattactaagttatttaccatgttatattctacaggacttggatagtggctcttgttcggagagtgttgtgtgttcctcggatgatgaaacggaagaca |
24026781 |
T |
|
| Q |
129 |
cctacaattca |
139 |
Q |
| |
|
| | ||||||| |
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|
| T |
24026782 |
cgttcaattca |
24026792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 8443 - 8552
Alignment:
| Q |
29 |
caattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagaca |
128 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||| ||||||| | | ||||||||| |||||||||| | |||||||||||||| ||| ||||||||| |
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| T |
8443 |
caattactaagttatttagcatgttatattctacaggacttggataatggctcttgttcggagagtgttatgtgttcctcggatgatgatatggaagaca |
8542 |
T |
|
| Q |
129 |
cctacaattc |
138 |
Q |
| |
|
| || ||||| |
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|
| T |
8543 |
cgtagaattc |
8552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 17792765 - 17792695
Alignment:
| Q |
68 |
ttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagacacctacaattc |
138 |
Q |
| |
|
||||| ||||| | ||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
17792765 |
ttgggaagtagtttttgttaggagagtggtctatgttcctcatatgaagatgtggaagacacgtacaattc |
17792695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 27051503 - 27051386
Alignment:
| Q |
17 |
tccgaggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaag |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||| || | ||| || ||| ||| || ||||||||||| ||||||| | ||||| |||| ||||||| |
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| T |
27051503 |
tccgaggattgtaaattactaagttatttagcattttttattgtgcaggacatggacaatagctcttgttcagagagtgatgtatgtccctcagatgaag |
27051404 |
T |
|
| Q |
117 |
atgtggaagacacctaca |
134 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
27051403 |
atgttgaagacatctaca |
27051386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 52475799 - 52475871
Alignment:
| Q |
154 |
attaagtacctctagattctcatccaagaatttaatcattcatgtcattgcaattgccatagtgacctgtcct |
226 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||| ||||| ||||||||||||||||| |||||| |||||||| |
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|
| T |
52475799 |
attaagaacctcctgattctcatccacaaatttgatcatccatgtcattgcaattgctatagtgtcctgtcct |
52475871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 13924867 - 13924758
Alignment:
| Q |
30 |
aattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgtttggagagtgttctatgttcctcggatgaagatgtggaagacac |
129 |
Q |
| |
|
|||||| |||||| ||||||| || | ||| ||||| ||| || ||||||||||| ||||||| | ||||| |||||||||||||||| ||||| | |
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|
| T |
13924867 |
aattaccaagttaatttgcattttttattgtgcaagagatggacaatagctcttgttcagagagtgatgtatgtacctcggatgaagatgtcgaagaaat |
13924768 |
T |
|
| Q |
130 |
ctacaattca |
139 |
Q |
| |
|
||||| |||| |
|
|
| T |
13924767 |
ctacacttca |
13924758 |
T |
|
Back To:
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