View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_48 (Length: 279)
Name: NF17264_high_48
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 17136721 - 17136470
Alignment:
| Q |
13 |
aatatccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccgctttataatcttgcattgctgagttacctttaaccatgcac |
112 |
Q |
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| T |
17136721 |
aatatccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccactttataatcttgcattgctgagttacctttaatcatacac |
17136622 |
T |
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| Q |
113 |
aaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcgtgttatgaaaacatctctgatttctctctatccaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
17136621 |
aaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcttgttatgaaaacatctttgatttctctctatccaaa |
17136522 |
T |
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| Q |
213 |
tggaccagatagtatgaataatagctgaattcaaaatgttgttgaccaactt |
264 |
Q |
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| T |
17136521 |
tggaccagatagtatgaataatagctgaattcaaaatgttgttgaccaactt |
17136470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 6936936 - 6937187
Alignment:
| Q |
13 |
aatatccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccgctttataatcttgcattgctgagttacctttaaccatgcac |
112 |
Q |
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| T |
6936936 |
aatatccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccactttataatcttgcattgctgagttacctttaatcatacac |
6937035 |
T |
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| Q |
113 |
aaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcgtgttatgaaaacatctctgatttctctctatccaaa |
212 |
Q |
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| T |
6937036 |
aaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcttgttatgaaaacatctttgatttctctctatccaaa |
6937135 |
T |
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| Q |
213 |
tggaccagatagtatgaataatagctgaattcaaaatgttgttgaccaactt |
264 |
Q |
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| T |
6937136 |
tggaccagatagtatgaataatagctgaattcaaaatgttgttgaccaactt |
6937187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 16309628 - 16309484
Alignment:
| Q |
99 |
ctttaaccatgcacaaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcgtgttatgaaaacatctctgatt |
198 |
Q |
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| T |
16309628 |
ctttaaccaaacacaaattgaaactcattttgacctcagcaagaataatattgaaaagagtggtcatggtctaatgtttgttttgaaagcatctctgatt |
16309529 |
T |
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| Q |
199 |
tctctctatccaaatggaccagatagtatgaataatagctgaatt |
243 |
Q |
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| T |
16309528 |
tctctctatccaaatggaccaaatagtatgaataatagctgaatt |
16309484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 18490622 - 18490478
Alignment:
| Q |
99 |
ctttaaccatgcacaaactgaagctcattttgacctcagcaagaatgatattgaaaagagtggtcatggcctgatgcgtgttatgaaaacatctctgatt |
198 |
Q |
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||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||| ||||| ||||||||||| |
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| T |
18490622 |
ctttaaccaaacacaaattgaaactcattttgacctcagcaagaataatattgaaaagagtggtcatggtctaatgtttgttttgaaagcatctctgatt |
18490523 |
T |
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| Q |
199 |
tctctctatccaaatggaccagatagtatgaataatagctgaatt |
243 |
Q |
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| T |
18490522 |
tctctctatccaaatggaccaaatagtatgaataatagctgaatt |
18490478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 16310437 - 16310353
Alignment:
| Q |
16 |
atccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccgctttataatcttgcattgctgagttacct |
100 |
Q |
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||||| |||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||| ||||| | |||||||||| |
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| T |
16310437 |
atccagatgaggagtgactctttttcctttgaaaaggatgttaaaaagcttggccactttataatcctgcatagttgagttacct |
16310353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 18491431 - 18491347
Alignment:
| Q |
16 |
atccaaatgaggagtgactcttttaactttgaacgggatgttaaagagcttggccgctttataatcttgcattgctgagttacct |
100 |
Q |
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| T |
18491431 |
atccagatgaggagtgactctttttcctttgaaaaggatgttaaaaagcttggccactttataatcctgcatagttgagttacct |
18491347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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