View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_54 (Length: 253)
Name: NF17264_high_54
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_54 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 39931761 - 39932000
Alignment:
| Q |
14 |
cacagacaataaatgcatagctatagtaagtattcattacacacgacacaacagaacaagcctaatcaagtagaaaaatagaaaatgagaaataattttt |
113 |
Q |
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| T |
39931761 |
cacaaacaataaatgcatagctatagtaagtattcattacacacgacacaacagaacaagcctaatcaagtagaaaaatagaaaatgagaaataattttt |
39931860 |
T |
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| Q |
114 |
gaacaaccaatttcagacaacttttgcttttgcaagaactattttatgtggttaaaaagtttaaatatatggctaattacatttaggtggtgttaaaact |
213 |
Q |
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| T |
39931861 |
taacaaccaatttcagacaactttcgcttttgcaagaactattttatgtggttaaaaagtttaaatatatggctaattacatttaggtggtgttaaaact |
39931960 |
T |
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| Q |
214 |
cattaaccatctatgtaacttcgttaggcacgaaattact |
253 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |
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| T |
39931961 |
cattaacaatcaatgtaacttcgttaggcacgaaattact |
39932000 |
T |
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