View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_62 (Length: 237)
Name: NF17264_high_62
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39574491 - 39574712
Alignment:
| Q |
1 |
tttagggggctaaaactgctattaattagcctaataaatatccaaaagtttatacgcggaaacacnnnnnnnnnnnnnnnnnnnnnntaatgggcttgag |
100 |
Q |
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| T |
39574491 |
tttagggggttaaaactgctattaattagcctaataaatatccaaaagtttatacgtggaaacacaaaaaatagaaaatgtaaaaaataatgggcttgag |
39574590 |
T |
|
| Q |
101 |
cccagccgcaaagtaatgcacatataacaacctgcttaagattatcatagttataggcaaagcgttcagcgaacagcggtagaagtggaggagcttcttc |
200 |
Q |
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| T |
39574591 |
cccagccgcaaagtaatgcacatataacaacctgcttaagattatcatagttgtaggcaaagcgttcagcgaacagcggtagcagtggaggatcttcttc |
39574690 |
T |
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| Q |
201 |
tttaggtatcacacactctcct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39574691 |
tttaggtatcacacactctcct |
39574712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 39570231 - 39570339
Alignment:
| Q |
125 |
taacaacctgcttaagattatcatagttataggcaaagcgttcagcga-----------acagcggtagaagtggaggagcttcttctttaggtatcaca |
213 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||| |
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| T |
39570231 |
taacagcctgcttaagattatcatagttataggcaaagcgttcagagagtaagagaggcacagcgatagcagtggaggagcttcttctttaggtatcaca |
39570330 |
T |
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| Q |
214 |
cactctcct |
222 |
Q |
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||||||||| |
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| T |
39570331 |
cactctcct |
39570339 |
T |
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