View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_63 (Length: 237)
Name: NF17264_high_63
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_63 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 413303 - 413523
Alignment:
| Q |
1 |
tatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggcttcattaatgttgctgctacataagcttcaactataaatttccaagatatt |
100 |
Q |
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| T |
413303 |
tatagtgtcatttgatcaatgtagccgatcccacttaatagaataaggtttcgttaatgttgctgctacataagcttcaactataaatttccaagatatt |
413402 |
T |
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| Q |
101 |
gaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaactggttggacatttgtaatgaacacaggattttcgagagctatatattgtaa |
200 |
Q |
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| T |
413403 |
gaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaattggttggacatttgtaatgaacacaggattttcaagagctatatattgtaa |
413502 |
T |
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| Q |
201 |
gtgattctttaaagtctattg |
221 |
Q |
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| T |
413503 |
gtgattctttaaagtctattg |
413523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 5053756 - 5053796
Alignment:
| Q |
11 |
tttgatcaatgtagccgatcccatttaatagaataaggctt |
51 |
Q |
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| T |
5053756 |
tttgatcaatgtagccgaccccatttagtaggataaggctt |
5053796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25755536 - 25755586
Alignment:
| Q |
1 |
tatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt |
51 |
Q |
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| T |
25755536 |
tatagtgtcatttgatccatgaagtcgatcccatttaatgggataaggctt |
25755586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 54279246 - 54279279
Alignment:
| Q |
7 |
gtcatttgatcaatgtagccgatcccatttaata |
40 |
Q |
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| T |
54279246 |
gtcatttgatcaatgtagccgatcccacttaata |
54279279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 82944 - 82988
Alignment:
| Q |
7 |
gtcatttgatcaatgtagccgatcccatttaatagaataaggctt |
51 |
Q |
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| T |
82944 |
gtcatttgatccatgtagccgaccccacttaatggaataaggctt |
82988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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