View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17264_high_65 (Length: 232)
Name: NF17264_high_65
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_65 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 42349019 - 42348818
Alignment:
| Q |
16 |
tcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccgcgtaggtagaaccgtcttggtcttgttctc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42349019 |
tcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccgcgtaggtagaaccatcttggtcttgttctc |
42348920 |
T |
|
| Q |
116 |
cattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagcaagaactgtgtctcaaaggggatttcttgtccacaattccccattctctg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42348919 |
cattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagcaagaactgtgtctcaaaggggatttcttgtccacaattccccattctctg |
42348820 |
T |
|
| Q |
216 |
tg |
217 |
Q |
| |
|
|| |
|
|
| T |
42348819 |
tg |
42348818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 19057274 - 19057201
Alignment:
| Q |
31 |
tcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccgcgtaggtagaaccgtcttg |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
19057274 |
tcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttg |
19057201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 50804914 - 50804987
Alignment:
| Q |
31 |
tcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccgcgtaggtagaaccgtcttg |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
50804914 |
tcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttg |
50804987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 50870963 - 50870890
Alignment:
| Q |
31 |
tcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccgcgtaggtagaaccgtcttg |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
50870963 |
tcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttg |
50870890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University