View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_high_69 (Length: 219)
Name: NF17264_high_69
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 3197509 - 3197318
Alignment:
| Q |
14 |
agaagaaatctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgc |
113 |
Q |
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| T |
3197509 |
agaagaaatctgaagctgcgcctagaaagaagaaatctgaagctgccccaagtaaggtgaaatctgaggtggcccctagtaagaagaaatctcaagccgc |
3197410 |
T |
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| Q |
114 |
ccctagtaagaagaaatcagtttcccctatgaagctgctaaaagcaagcaagtcatcaacttccgccaaatctaaaagttgtaagcaggaag |
205 |
Q |
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| T |
3197409 |
ccccaataagaagaaatcagtttcccctatgaagctgctaaaagcaagcaagtcatcaacttccgccaaatctaaaagttgtaagcaggaag |
3197318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 3197671 - 3197554
Alignment:
| Q |
14 |
agaagaaatctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgc |
113 |
Q |
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| T |
3197671 |
agaagaaatctgaagctgcgcctagaaagaagaaatctgaagctttcccaagtaaggtgaaatctgaggcggcccctagtaagaagaaatctcaagctgc |
3197572 |
T |
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| Q |
114 |
ccctagtaagaagaaatc |
131 |
Q |
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| T |
3197571 |
gcctagaaagaagaaatc |
3197554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 3197590 - 3197473
Alignment:
| Q |
14 |
agaagaaatctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgc |
113 |
Q |
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| T |
3197590 |
agaagaaatctcaagctgcgcctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctgggacggcccctagtaagaagaaatctgaagctgc |
3197491 |
T |
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| Q |
114 |
ccctagtaagaagaaatc |
131 |
Q |
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| T |
3197490 |
gcctagaaagaagaaatc |
3197473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 3197748 - 3197635
Alignment:
| Q |
18 |
gaaatctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccct |
117 |
Q |
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|||||||||||| || ||||| |||||||||| | || ||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||| || ||| |
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| T |
3197748 |
gaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaaggtgaaatctgaggcggcccctagtaagaagaaatctgaagctgcgcct |
3197649 |
T |
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| Q |
118 |
agtaagaagaaatc |
131 |
Q |
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| T |
3197648 |
agaaagaagaaatc |
3197635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 3197794 - 3197697
Alignment:
| Q |
26 |
aagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaag |
123 |
Q |
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||||||| | ||| |||||||||| | ||||||| || |||||| |||||||||| | || | ||||||||||||||||||| | ||||| |||||| |
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| T |
3197794 |
aagctgctcatagtaagaagaaatctaaagctgctcctagtaagatgaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaag |
3197697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 3197757 - 3197716
Alignment:
| Q |
90 |
tagtaagaagaaatctcaagccgcccctagtaagaagaaatc |
131 |
Q |
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| T |
3197757 |
tagtaagatgaaatctgaagccgcacctagtaagaagaaatc |
3197716 |
T |
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