View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_1 (Length: 794)
Name: NF17264_low_1
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 13 - 779
Target Start/End: Complemental strand, 3161744 - 3160983
Alignment:
| Q |
13 |
aatattggatgatatagaaggagaagaaaaatccatgccaattgatgtttgtgagnnnnnnngaaagagttgatgtttgtgagttgtcaccctcttctta |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3161744 |
aatattggatgatatagaaggagaagaaaaaaccatgctaattgatgtttgtgagtttttt-gaaagagttgatgtttgtgagttgtcaccctcttctta |
3161646 |
T |
|
| Q |
113 |
tccaatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttgatctggcgtctctaatgcttggcga |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3161645 |
tccgatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttggtctggcgtctctaatgcttggcga |
3161546 |
T |
|
| Q |
213 |
tggaattagaggctgatgttgcattttctttgtctctaaacttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttattatgagcat |
312 |
Q |
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||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3161545 |
tgggattagaggctgatgttgcattttcttcgtctctaaatttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttcttataagcat |
3161446 |
T |
|
| Q |
313 |
gaattttgtttttgctacaagtcatttcgaggttggttagttcattagaaaactctcgtcccattttgttttctgattcaagtttcaacttcaagcactc |
412 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3161445 |
ccttttt-tttttgctacaagccatttcgaggttggttagttcattagaaaactctcttcccattttgttatctgattcaagtttcaacttcaagcactc |
3161347 |
T |
|
| Q |
413 |
aggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatcactatcatca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161346 |
aggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatcactatcatca |
3161247 |
T |
|
| Q |
513 |
ttgatctctaactccacatgcttctcaatatcttcatgatcaatattaaaagcagaataatagttcattgcagcatcatcaacattgtcaaggaattgaa |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161246 |
ttgatctctaactccacatgcttctcaatatcttcatgatcaatattaaaagcagaataatagttcattgcagcatcatcaacattgtcaaggaattgaa |
3161147 |
T |
|
| Q |
613 |
aatcttggttgaaactcaaaccagtgttttcttcaatgtcttccactttttcatcacttgatgtagtttccttttccttgcaaatgaattcatctttttc |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161146 |
aatcttggttgaaactcaaaccagtgttttcttcaatgtcttccactctttcatcacttgatgtagtttccttttccttgcaaatgaattcatctttttc |
3161047 |
T |
|
| Q |
713 |
agttaaacatgattcaaaactacttgtaatgcagtcaatttgtgcgatagtactgttgttactaaat |
779 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
3161046 |
agttaaacatgattcaaaactacttgtaatgcagtcaatttgtgc---actactgttgttactaaat |
3160983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 378 - 504
Target Start/End: Complemental strand, 4039573 - 4039447
Alignment:
| Q |
378 |
ttgttttctgattcaagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatag |
477 |
Q |
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|||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
4039573 |
ttgtttccagattcaagtttcaatttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataa |
4039474 |
T |
|
| Q |
478 |
catttcttagcattgaagactcatcac |
504 |
Q |
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|| ||| | |||||||| |||||||| |
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| T |
4039473 |
cagctctaatcattgaaggctcatcac |
4039447 |
T |
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